Gene detail

Gene detail information of Glyur000005s00001102

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30690.2	4.00E-115	Sec14p-like phosphatidylinositol transfer family protein
NR	NP_001242249.1	0	uncharacterized protein LOC100779100 [Glycine max]
Swissprot	tr\|Q94C59\|PATL4_ARATH	1.00E-140	Patellin-4
trEMBL	tr\|C6TDH7\|C6TDH7_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19879.1}

Sequence

Transcript Sequence

>Glyur000005s00001102.1
GTGGGGCCANCCAAGTTGATGCTATTCACGCCTAAATTTGCTGGCCTCCAGAGCAGCAAAACCCTCGGGAAAAATGGAATCTCCCAACGGCTCCTCTTCGGTGGAGTGGATCCATCCAGTTATGTGACCGTTGGTGGACCCCCCAACCTCCCCTTTTCTCTCTCTCTCTCTCTCTCGCTCATAGTCCCATTTGTCCTTTTCAAATTCATACATATAACCCTCACAACTCACACCACCCTTCTAAACACAACACACAACTCAACTCAGCACCTGTTTCTCCATTTTGGTACAACATTACTAAGTGTGTAACCACCATGACTGCTGAGGTTATGAGTACTCAAGAAGAAACCCAGACAGCAGCAGCTGAGGTTGTTGTTGATGCTGCAGCAGCACAAGAGGGGAAGAAGGTGGTCGATGTTGAAGAACCAAAGGAATCATCGGTGGAGAATGATGAACATGAACATGAACAACACCAACAACAACAACCCAAAACTAAGACAGTGGAGAAGAGCTCATCTTACAAGGAAGAAAGCAACTTCCTTTCTGATCTCAAAGAGTTCGAGAAAAAGGCTCTGAATGATCTCAAGTCAAAGCTGGAGGAAGCTATCTCAGAGAACACCCTCTTTGAGAAAGAAGAGGGTGCTGAAGAAGAAGAAGCCATGAAGAAGAATGACGTGTCTCTGTGGGGTGTGCCACTTTTGCCAAGTAAAGGAGCTGAGGGTACTGATGTGGTTCTGTTGAAGTTTTTAAGGGCTAGGGAGTTCAAGGTGAATGATGCATTTGAGATGCTGAAGAAGACCCTTAAATGGAGGAAGGAATCTAAGGTTGATTCTGTCTTGGATGAGGATTTTGGCTCTGGCTTGGCCACTGCAGCATACATGAATGGTGTTGATCGTGAAGGGCACCCTGTGTGCTACAACATCTTTGGTGTGTTTGATGGGGAAGAGCTTTATCAGAAGACTTTTGGGACTCAGGAGAAGCGTGTTGAGTTCTTGAGGTGGAGGTGCCAGTTGATGGAGAAGGGTATTCAGAAGCTACATTTCAAGCCAGGTGGTGTATCTTCTTTGCTTCAAATCAATGACCTTAAGAACTCCCCTGGTCCCTCTAAGAAGGAGCTTCGAATTGCCACGAAGCAAACTGTTTCCATGTTGCAGGACAATTACCCTGAAATGGTAGCCAAAAATAGCAAATTTGTGGTTGCTCGTCCTGCCAAGGTCACTGAAACACTCACCAAGTACATTCCAATTGAGGAGATCCCAGTTCACTATGGTGGCTTCAAGAGGGAAAATGATTCTGAGTTCTCTGCCCATGATGCTGCTGTTTCAGAACTCACTCTCAAGGCTGGATCAACTGCAACTATTGAGATTCCTACATTAGAGGTAAGTTACAAGGAGGAATTTGTTCCCAATGATGAGGGCTCTTACACAGTCATTGTTCAAAAGGGGAAGAAGATGGGTTCACAAGAAGCACCTATTAGGAACACTTTCAGGAACAATGAACCAGGGAAGGTTATCCTCANAATAGAGAACACATCAAACAAAAAGAAGAGGGTTCTATACCGTTACAAGACCAACAAGAGCTCGTTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	588601	591020	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001102.1	PF03765.10	CRAL_TRIO_N	84	162	5.00E-11
Glyur000005s00001102.1	PF00650.15	CRAL_TRIO	187	288	6.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.083
SRR1783600	control	13.289
SRR1783602	moderate drought stress	4.803
SRR1811619	moderate drought stress	4.656

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.042
DRR006520	Root Summer glycyrrhizin high producing strain	28.985
DRR006521	Root Winter glycyrrhizin high producing strain	1.635
DRR006522	Root Winter glycyrrhizin high producing strain	1.684
DRR006523	Root Summer glycyrrhizin low producing strain	14.798
DRR006524	Root Summer glycyrrhizin low producing strain	14.719
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.923
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	120.999
SRR2868004	Drought Stress (root)	42.018
SRR2967015	Control (root)	62.104

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.270
SRR9715740	Leaf	2.426
SRR9715741	Leaf	3.059
SRR9715739	Root	2.207
SRR9715742	Root	2.503
SRR9715743	Root	2.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.286
SRR8749028	MeJA induced 9h	21.800
SRR8749029	MeJA induced 9h	22.134
SRR8749030	Uninduced	21.088
SRR8749031	Uninduced	9.633
SRR8749032	Uninduced	5.456

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.660
SRR8400027	Control - Root	66.613