Gene detail

Gene detail information of Glyur000005s00001101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30680.1	0	toprim domain-containing protein
NR	XP_004512933.1	0	PREDICTED: DNA primase/helicase-like [Cicer arietinum]
COG	YP_769523.1	2.00E-67	phage DNA primase/helicase [Rhizobium leguminosarum bv. viciae 3841]
Swissprot	tr\|B5X582\|TWIH_ARATH	0	Twinkle homolog protein, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|K7MB62\|K7MB62_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G14241.1}

Sequence

Transcript Sequence

>Glyur000005s00001101.1
CTCACTGCTCACTNAGTGCTGTGTTCATACAAAACAAAAGTGAGCGCTCATTTTTCGTTTTTCAGAGAGTTAAATGAAAAATCCTCTCTTCAGTTCAGTGGCTTAAACGGTTAAACCCTCTCCTTCCCCTTTCACTCTCACAACCACACCCTCCCATGGAACCCCTTTGTGTACTGTAGAAAACAACAACAAAAGACTTCATTCACTCTTCTCTGTTTCTCAGAACATGCGTTTTCGTTATCCCCATAAAACTCTACTCCCTTNACTATCCTCTTCAAAACTCGCTACCATGACCACCCAACCCCTCTTCCACTCTTCCACNCCCTTCTCAAACTCTCAAACGCACCGTTTTCGAGCCCGAAGAGCCCTCTTCACCGTTTTCTGCTCGAAACATGTTTCGAAACAGCCTCCTCCGTCGTCACCGCTCAGAACCAACGGCTATCACGGTACTTCTCATGCCAGTGTTCCCAGGCCAATTCATTTGGAGAACCCGGAGGAGAACAGTGTGAAGATGCAATTCAATGTTTTGAAGAAGAAGTTGAAGGCTGTTGGAATGGACACCGGAATATGTGTTCCGGGGCAATACAACCACTTGCTTTGTCCCGAGTGCCTAGGTGGTGACTCAGAAGAAAAGAGCTTATCTCTTTACATTTCACCAGACGGGGGGTCTGCTGCATGGGTGTGCTTTCGTGGAAAGTGTGGGTGGAAAGGCAGCACACAGGCCTTTGCTGGCACCGATTCATATTCTACAACAAGGAATCAAGTAACCCCAGTTAAGAAAATAAGAGAAATTAGAGAGGAGGACTTGCAACTAGAGCCACTTTGTAATGAGCTGCTCGCATATTTTGCAGAGCGCTTGATTTCGAAAGAGACTCTACAGAGAAACGGTGTTAAGCAGAGAAAATATGATGACCAGATTGTTATTGCATTCACATATCGTCGTAATGGAGCGCTTATTAGTTGCAAGTATCGAGACATCAACAAGGTCTTTTGGCAGGAAGCAAACACTGCAAAGATCTTTTATGGATTGGATGACATAGTGGGACAAAGTGATATTATCATTGTTGAAGGTGAAATGGACAAGCTGGCGCTGGAAGAAGCTGGTTTCCTCAATTGTGTGAGTGTTCCTGATGGTGCACCTCCATCAGTCTCTTCAAAAGAGTTGCCGCCTCCAGAGAAGGANACGAAGTATCAGTATCTGTGGAACTGCAAGGATGAACTAATGCAGGCATCCCGGATTATACTTGCCACCGATGGAGATCCACCTGGTCAAGCCTTGGCCGAGGAGCTTGCACGCCGTATAGGGAAAGAAAAATGCTGGCGTGTCAGGTGGCCTAGAAAAGGGCAGTTTGATAATTGCAAAGATGCAAATGAGGTTCTCATGTATTTGGGTCCTGATGCACTCAAGGAAGCAATTGAGAATGCAGAATTATATCCTATACGTGGATTGTTTAACTTCAGAAGTTACTTTGATGAGATTGATGCATATTATCATCGAAGTTTGGGATATGATACTGGTGTCTCAACTGGGTGGAATAATCTGAATGAGTTTTACAATGTTGTACCAGGAGAACTGACCATAGTAACTGGAGTTCCCAATTCAGGGAAGAGTGAGTGGATTGATGCTCTTCTTTGCAATCTTAATCAAATTGTTGGCTGGAAATTTGCACTTTGTTCCATGGAGAACAAGGTTAGAGAACATGCTCGAAAACTTTTGGAGAAACACGTGAAGAAGCCTTTCTTTAATGAACGTTATGCTGAACAAGTTGAACGGATGAGTTTGGAGGAATATGAACAGGGCAAGCTCTGGTTAAATGATACTTTTTTTCTCATAAGCTGTCTGTACTTGAGAAGTCATGCTGCTGTGATTACTATGCTGGATTACTTGGCTGTTAATACTAGGTGTGAAGATGATACCCTTCCAAGTGTAAAGTGGGTTCTTGANCTTGCAAAAGCAGCTGTATTAAGGCACGGGGTGCGTGGACTTGTAATTGATCCTTATAACGAGCTCGATCACCAGCGACCTCCAAATCAGACTGAAACTGAATATGTGAGCCAGATGCTTACCTTAATCAAACGTTTTGCCCAACATCATGGATGCCATGTTTGGTTTGTAGCACATCCCAGGCAGCTGCATAACTGGCATGGGAGTCCTCCCAATCTCTATGATATAAGCGGAAGTGCACACTTCATAAATAAGTGTGACAATGGAATTGTTATTCATCGTAATCGGGATCCTGAGGCTGGGCCTATTGATCAAGTGACGGTTTGTGTTCGAAAGGTACGGAATAAGGTTGCAGGGACAGTAGAGGGCAACGAGTTCATCTTACTCAGTTACAAGTTACGCAGAGAAGCCACCATCTCGTTAACACTCACCGAGCTCGAACCCAGAGACCGGCTCAGCGACCGCGCCACCGGAGACATCGGAGGAGACTCCACCAGAGGAGTCACAGGCGGGGAAACAGAACCCGGAGAAGACAGGAAGGGGAGGGTCTTGGCACAAGAGGACTCAATCGCGAGCCTGAGAGGAGAACCATTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	575856	587121	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006260 DNA replication

molecular_function

GO:0003678 DNA helicase activity

GO:0003697 single-stranded DNA binding

GO:0005524 ATP binding

GO:0043139 5'-3' DNA helicase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001101.1	PF13662.1	Toprim_4	276	367	3.40E-15
Glyur000005s00001101.1	PF13481.1	AAA_25	445	634	2.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.363
SRR1783600	control	4.587
SRR1783602	moderate drought stress	4.840
SRR1811619	moderate drought stress	4.745

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.304
DRR006520	Root Summer glycyrrhizin high producing strain	3.319
DRR006521	Root Winter glycyrrhizin high producing strain	1.856
DRR006522	Root Winter glycyrrhizin high producing strain	1.941
DRR006523	Root Summer glycyrrhizin low producing strain	6.534
DRR006524	Root Summer glycyrrhizin low producing strain	6.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.147
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.900

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.445
SRR2868004	Drought Stress (root)	5.591
SRR2967015	Control (root)	6.063

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.788
SRR9715740	Leaf	20.237
SRR9715741	Leaf	6.446
SRR9715739	Root	2.800
SRR9715742	Root	3.696
SRR9715743	Root	3.743

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.754
SRR8749028	MeJA induced 9h	5.800
SRR8749029	MeJA induced 9h	4.230
SRR8749030	Uninduced	0.628
SRR8749031	Uninduced	0.158
SRR8749032	Uninduced	0.655

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.839
SRR8400027	Control - Root	6.640