Gene detail

Gene detail information of Glyur000005s00001085

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39120.1	2.00E-132	Ubiquitin carboxyl-terminal hydrolase family protein
NR	XP_004514407.1	0	PREDICTED: uncharacterized protein LOC101490033 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q689D6\|RPD1_ARATH	2.00E-24	Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBL	tr\|A0A072TWK7\|A0A072TWK7_MEDTR	0	Plant organelle RNA recognition domain protein {ECO:0000313\|EMBL:KEH21822.1}

Sequence

Transcript Sequence

>Glyur000005s00001085.1
ATGTTATTCAACTTCGAGAAGTTTACAGCCAAAACAATTAGAAAGCTACTCAGGCCTTTTGAAGAATCAATCTTACCCGTTAAACACAAGATCCCTAGTCTTCCTTTCTCACACATCCAGAGGCATGGTTATGTGAATGTGTACATGAAATGGAAAAAAGATTCATACTATGACTNGATTGAGCACATTCACCAGTCCATTCAGCTCAAGCCGCTGATCGCGCTGAAAAACTGCATTGCCCAGGATCCCAATGGGTGCATCCCTATCTCTGCTGTATCAAAGAGGGGATTACAGTTAGATGTGCCGATGAAGGTCGCAAGATTTCTGCGGCAATATCCATCCATTTTTGAGGAGTTTACAGGTCCTAAGTATAATCTTCCTTGGTTCAGGTTGACATCTGAAGCTGCTGAGATTGACAGGGAAGAGAAGAGAGTATATGAGGAATGCAGAGAGGAATTAAGATCCAGGTTGAGGAAGATGATATTGATGACCAAAGAGAATGTTCTACCGGTAAAGATAATTCAAGGGATGCAGTGGTATTTGGGGCTGCCTAGTGATTTTTTGCAGTACCCAGAACAAAATCTTGATGAATCATTTAGGTTTGTAGAGATGGAAGGTGGATTGAAGGGGTTGGCTCTTGAAAGCAGAGAGAAGGTTTACTCTGTAATGGAGAATAACGCCATGAAAAGAGGGTTGGGCCCGATGGAGGCCATTGATTTTCCATTTTTTCCATCAAAGGGTTTAAGGTTGAGAAGGAAGATTGAGAATTGGCTACATGAATTTCAGAAGCTTCCTTATATTTCACCTTATGATGATTTCTCAAATTTGGATCCAAACAGTGACATAGCAGAGAAAAGACTTGTAGGGGTGCTTCATGAACTGCTTTCCCTATTTGTNGAGCATTCAGCAGAGAGAAGAAAGCTCTTTTGCCTCAAGAAGCATTTTGGGTGGCCACAGAAAGTGCACAAAGCATTTGAGCGGCATCCCCATATGTTTTACCTATCTTTCAGGAATAAAACTTGTACAGTCATTCTTAAGGAAGCTTACAACGATGAATTGGCTATTGAGAAGCATCCTCTATTGAGGGTGAGGAAGAGGTACATCGAGTTGATGAAGGAATCGGAAGTAATTTTAAGGAACAGGAGGATGAATAATCGATTTTCTAATTCTAGTGCAAAACTGGATTCAGATTCAAATGATTTGGATGAAANGGGACATGAGATGGCAGGTTGTTCCTTGGAGCAGGCTATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	495552	496805	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001085.1	PF11955.3	PORR	51	377	3.00E-97

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.659
SRR1783600	control	2.608
SRR1783602	moderate drought stress	2.410
SRR1811619	moderate drought stress	2.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.549
DRR006520	Root Summer glycyrrhizin high producing strain	5.307
DRR006521	Root Winter glycyrrhizin high producing strain	2.346
DRR006522	Root Winter glycyrrhizin high producing strain	2.086
DRR006523	Root Summer glycyrrhizin low producing strain	3.483
DRR006524	Root Summer glycyrrhizin low producing strain	4.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.461
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.276
SRR2868004	Drought Stress (root)	11.487
SRR2967015	Control (root)	10.721

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.679
SRR9715740	Leaf	9.019
SRR9715741	Leaf	7.225
SRR9715739	Root	0.256
SRR9715742	Root	2.885
SRR9715743	Root	3.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.767
SRR8749028	MeJA induced 9h	11.659
SRR8749029	MeJA induced 9h	6.301
SRR8749030	Uninduced	5.715
SRR8749031	Uninduced	7.827
SRR8749032	Uninduced	4.349

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.112
SRR8400027	Control - Root	8.117