Gene detail information of Glyur000005s00001084


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37660.13.00E-26Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
NRXP_004486506.14.01E-80PREDICTED: 50S ribosomal protein L7/L12-like [Cicer arietinum]
COGYP_004063235.16.00E-1650S ribosomal protein L12 [Candidatus Liberibacter solanacearum CLso-ZC1]
Swissprottr|Q1XDE8|RK12_PYRYE3.00E-1950S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368}
trEMBLtr|A0A072V6X0|A0A072V6X0_MEDTR2.00E-7450S ribosomal protein L7/L12 {ECO:0000313|EMBL:KEH37118.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00005492831493307-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000005s00001084.1PF00542.14Ribosomal_L12911574.70E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.104
SRR1783600control10.196
SRR1783602moderate drought stress7.372
SRR1811619moderate drought stress7.215

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.326
DRR006520Root Summer glycyrrhizin high producing strain17.520
DRR006521Root Winter glycyrrhizin high producing strain13.456
DRR006522Root Winter glycyrrhizin high producing strain12.686
DRR006523Root Summer glycyrrhizin low producing strain10.109
DRR006524Root Summer glycyrrhizin low producing strain11.361
DRR006525Leaf Summer glycyrrhizin high producing strain8.832
DRR006526Leaf Summer glycyrrhizin high producing strain7.630

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)39.456
SRR2868004Drought Stress (root)28.501
SRR2967015Control (root)31.878

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf29.555
SRR9715740Leaf37.629
SRR9715741Leaf23.719
SRR9715739Root51.721
SRR9715742Root27.631
SRR9715743Root33.828

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.007
SRR8749028MeJA induced 9h9.275
SRR8749029MeJA induced 9h9.984
SRR8749030Uninduced2.852
SRR8749031Uninduced0.489
SRR8749032Uninduced1.540

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root44.156
SRR8400027Control - Root44.108

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved