Gene detail

Gene detail information of Glyur000005s00001080.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48750.1	3.00E-151	cell division control 2
NR	XP_006597677.1	0	PREDICTED: cell division control protein 2 homolog [Glycine max]
COG	YP_315458.1	4.00E-28	Serine/threonine protein kinase [Thiobacillus denitrificans ATCC 25259]
Swissprot	tr\|Q41639\|CDC2_VIGAC	0	Cell division control protein 2 homolog
trEMBL	tr\|I1MG96\|I1MG96_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G14390.1}

Sequence

Transcript Sequence

>Glyur000005s00001080.1
GGAAAGCGTGAAGGGTGAGAGAGAGAGAGGTGTTTGTGTTGGGACTTGGGGGTGTGAGTGTGTGATACATACAGAGAGAGTCTCACTCACTGCACACTGCGCCAACCTTATTTCTTCTCACTCAGACAGATCTTCTCCATTTCTTCACTCAATTCCCTTCTCAGTCTCTTAGTAGCTTTCCACAGAGACCTTCATCCATGGAACAGTACGAGAAGGTGGAGAAGATTGGCGAAGGGACATACGGCGTCGTTTACAAGGCTCGCGACCGCGTCACCAACGAGACCATCGCGCTCAAGAAAATTCGCCTCGAGCAGGAGGATGAAGGCGTTCCCAGCACCGCCATACGCGAGATTTCTCTCCTCAAAGAAATGCAGCATAGGAACATTGTTAAGTTGCAGGATGTAGTTCACAGTGAGAAGCGATTGTATCTGGTTTTTGAGTACCTGGACTTAGATCTAAAGAAGCACATGGATTCATCTCCTGAGTTTGTTAAAGATCCACGGCAAGTAAAAATGTTCCTCTATCAAATTCTCTGCGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCCGTACTAATTCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCTTTTGGCATTCCTGTCAGGACATTTACACATGAGGTGGTGACACTGTGGTACAGAGCTCCAGAAATATTGCTTGGATCTCGTCATTATTCGACCCCAGTTGATCTTTGGTCAGTGGGATGTATATTTGCAGAGATGGTAAACCGACGACCTCTATTCCCTGGGGACTCTGAGATTGATGAATTGTTCAAAATATTTAGAATCTTGGGTACACCAAACGAAGATACATGGCCAGGAGTAACTTCATTGCCTGATTTTAAATCAACATTTCCCAAGTGGCCACCTAAGGACCTAGCAACCGTGGTTCCAAATCTTGATCCAGCTGGTCTTAATCTTCTTTCTAGCATGCTTTGCTTGGATCCCACCAAAAGAATTACCGCCAGGAGCGCTGTGGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGATTCGGTATCTTCATGGCAAAGGTGTTTATAGCAATATGTGCAGAATTTGTGGGTTTTGATTGTGCGAGAAATGCGTGCTATCTTTGCTATTTTCTTCGATGACTTGAGACTGTCATTTCAATTTTTTGTCCTTTACAAATATTTCAGATTCAATTCGAGTGTGATCATATTGCATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	460810	465877	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02206	CDK2	EC:2.7.11.22	FoxO signaling pathway	map04068
			PI3K-Akt signaling pathway	map04151
			Cell cycle	map04110
			Oocyte meiosis	map04114
			p53 signaling pathway	map04115
			Progesterone-mediated oocyte maturation	map04914
			Pathways in cancer	map05200
			Viral carcinogenesis	map05203
			Prostate cancer	map05215
			Small cell lung cancer	map05222
			Measles	map05162
			Hepatitis B	map05161
			Herpes simplex infection	map05168
			Epstein-Barr virus infection	map05169

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001080.1	PF00069.20	Pkinase	4	287	4.50E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.585
SRR1783600	control	38.003
SRR1783602	moderate drought stress	28.118
SRR1811619	moderate drought stress	28.155

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.583
DRR006520	Root Summer glycyrrhizin high producing strain	29.185
DRR006521	Root Winter glycyrrhizin high producing strain	2.559
DRR006522	Root Winter glycyrrhizin high producing strain	2.503
DRR006523	Root Summer glycyrrhizin low producing strain	18.990
DRR006524	Root Summer glycyrrhizin low producing strain	19.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.003
SRR2868004	Drought Stress (root)	39.858
SRR2967015	Control (root)	47.205

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.557
SRR9715740	Leaf	3.613
SRR9715741	Leaf	4.682
SRR9715739	Root	19.515
SRR9715742	Root	14.762
SRR9715743	Root	14.717

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	41.725
SRR8749028	MeJA induced 9h	24.688
SRR8749029	MeJA induced 9h	33.112
SRR8749030	Uninduced	7.905
SRR8749031	Uninduced	1.941
SRR8749032	Uninduced	6.893

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.896
SRR8400027	Control - Root	44.691