Gene detail

Gene detail information of Glyur000005s00001078

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30620.2	0	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003533104.1	0	PREDICTED: UDP-arabinose 4-epimerase 1-like [Glycine max]
COG	YP_005445125.1	2.00E-96	UDP-glucose 4-epimerase [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|Q9SA77\|ARAE1_ARATH	0	UDP-arabinose 4-epimerase 1
trEMBL	tr\|I1L0L0\|I1L0L0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G03490.6}

Sequence

Transcript Sequence

>Glyur000005s00001078.1
CAACATGGAAGCAGAGACAAAGTCTCCACCTATTAGAACCCCCCTTCTTCTCCTATTCTCTTCTCTCACCATTCTCACACACACACTCTCTCTCTCTCAATTTCAACACCACCCCACGATTCTACTGCACCTGCTCACACATTCCCCATTTGTACTTTTTTATTTCCCCTCATTTTCTTTCCAACTCATCCTGGGTAGTTCTACACAGAGAATCTGAATATCACTCAAAATCCTTCTGGGAGTGGAGCTTGATGTGATCATTGATATTGGGGAATAAGACCTTATTGATTTTGCAAATGCTAAATTTTTCTAGGTCCAGAAGTCAACCAAGGGCAACCAGACCAATGTCATTAGGAGGAATGGATTATGTCGATCCGAAAAGAAAGGGAAATTTTGTTGGAAAAGTTATTCTTGCTGCAGCATTAACGGCATTGTGCATTATCGTGATCAAGAAATCTCCGTTTTTGAATTCTCCTAGTCCGTTTTCCATCTATGAACCAGGGGTCACTCATGTTTTAGTGACAGGAGGTGCTGGCTATATTGGCTCACATGCTACCTTACGACTTCTGAAGGAATCTTATCGTGTCACCATAGTGGATAATCTCTCAAGAGGAAATCTGGGTGCCGTCAGGGTTCTTCATGACTTATATCCAGAACCTGGAAGGCTTCAATTTATATATGCCGACTTGGGAGATGCAAAATCTGTTAATAAAATATTTTCAGAGAATAAGTTTGATGCTGTGATGCACTTTGCTGCTGTTGCATATGTGGGAGAAAGCACACTTGACCCTCTTAAGTATTATCACAATATCACATCAAATACCTTGTTGGTATTGGAGTCTATGGCTAAATACGGTGTGAAGACATTGATATATTCTAGTACATGTGCAACATATGGGGAACCTGAAAAGATGCCCATTACAGAAGAGACAGAACAGAAACCAATCAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATTCTTGATTTTTCTAAAAATTCCAAGATGGCAGTAATGATTCTGAGATATTTCAATGTGATTGGATCAGACCCTGAGGGGAGATTAGGTGAGGCGCCAAGGCCTGAACTTCGAGAACATGGTCGAATTTCTGGTGCCTGCTTTGATGCAGCTCGTCGTATTACACCTGGCTTAAAGGTTAGAGGAACAGACTATAACACACCTGATGGAACATGCATTAGAGATTATATCGATGTAACTGACCTGGTTGATGCTCACGTGAAAGCTCTTGAAAAGGCACAACCTGCTAAAGTTGGGATCTACAATGTTGGCACTGGAAAAGGTAGGTCAGTTAAGGAGTTTGTGGATGCTTGTAAAAAGGCTACAGGGGTGGACATCAAGGTAGACTTCCTTCCCCGGAGGCCGGGCGATTATGCTGAGGTGTATAGCGACCCGACTAAGATCAGGCGTGAACTGAATTGGACTGCACAATACACTGACCTCAAAAAGAGTTTACAGGTTGCATGGAAATGGCAGAAATCTCGCCCTGATGGTTATGGTGTTTCATCTGCAATCTGAAGTTTCTAAGAGCTTTAGCAAAAAGCATCCATAGCAGCTGCTCCTTCTATTGCTTGCTCTCATACATGGGGCTGGTGAAGTTTTTGTTCTTAGGGAGTTGGTAGTTCATTCATTATACTTATATGTATTCAAAAAGATATAATAATGACTCAATAATATAATGCCCAGCCTCTGATATAGTTTTCCTCTATCTTTTGATTCTTTTCCATTCTAAATAAACATTACGAGGCATTTCCTTTCCATATATAGATGGTTATTATAGTTTATTTGGTGGCACTCTAACCTTGTTCAAGCCAATCAAAATTTGCTTGCTTCTGTAGACTTTAGGATAAGTTGCGATGTTGATCTTGAAAGTGTTTTTCGGGGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	444153	449211	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12448	UXE, uxe	EC:5.1.3.5	Amino sugar and nucleotide sugar metabolism	map00520
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0006012 galactose metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0003978 UDP-glucose 4-epimerase activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001078.1	PF01370.16	Epimerase	73	334	4.40E-51
Glyur000005s00001078.1	PF13950.1	Epimerase_Csub	347	409	2.10E-18
Glyur000005s00001078.2	PF01370.16	Epimerase	1	109	1.30E-10
Glyur000005s00001078.2	PF13950.1	Epimerase_Csub	122	184	5.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.740
SRR1783600	control	24.434
SRR1783602	moderate drought stress	27.995
SRR1811619	moderate drought stress	27.406

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.618
DRR006520	Root Summer glycyrrhizin high producing strain	53.878
DRR006521	Root Winter glycyrrhizin high producing strain	44.302
DRR006522	Root Winter glycyrrhizin high producing strain	43.102
DRR006523	Root Summer glycyrrhizin low producing strain	48.359
DRR006524	Root Summer glycyrrhizin low producing strain	47.746
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.922
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.864

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	73.071
SRR2868004	Drought Stress (root)	70.400
SRR2967015	Control (root)	59.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.786
SRR9715740	Leaf	36.815
SRR9715741	Leaf	37.835
SRR9715739	Root	17.528
SRR9715742	Root	44.214
SRR9715743	Root	38.906

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	187.082
SRR8749028	MeJA induced 9h	218.059
SRR8749029	MeJA induced 9h	217.538
SRR8749030	Uninduced	190.921
SRR8749031	Uninduced	78.924
SRR8749032	Uninduced	86.465

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.567
SRR8400027	Control - Root	74.056