Gene detail

Gene detail information of Glyur000005s00001071

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15640.1	6.00E-77	Mitochondrial substrate carrier family protein
NR	XP_004486513.1	0	PREDICTED: solute carrier family 25 member 44-like [Cicer arietinum]
Swissprot	tr\|Q9FHX2\|MFL1_ARATH	2.00E-22	Protein MITOFERRINLIKE 1, chloroplastic (Precursor)
trEMBL	tr\|G7IKZ0\|G7IKZ0_MEDTR	0	Substrate carrier family protein {ECO:0000313\|EMBL:AES64875.2}

Sequence

Transcript Sequence

>Glyur000005s00001071.1
ATGGCCATGGAAGCTGAGGCTGCCACCCCTCCACAGTTGGCNCTCTCTGATACAGATATCAACTGGGACAGGTTGGATAAGACCAAGTTTCACATCANTGGTGCCATACTCTTCACTGTTCAATCAGCTTTGCTTCATCCAACGGCAGTGGTGAAGACAAGGATGCAAGTAGCAGGGTCAGGATCACTCTCTCCTCACATGAAAGGAATGTCAGTGTTCACTCACATTCTGAGGAGTGATGGAATTCCTGGAATCTTTAGAGGCTTTGGAACTTCTGCTATTGGATCAATGCCAGGTAGGGTCCTGGCTCTTACTTCTCTTGAGATGTCAAAGGACATTGTGTTGAAACACACCCAAGGGAGTGGTATCCCTGAAGCATCACGTATTGGCCTTGCAAATGGGGTAGCTGGCATGGTGTCAAACCTGNTCTCTTGTGTATACTTTGTGCCTTTGGATGTGATCTGCCAGAGGTTAATGGTTCAAGGTCTTCCTGGAACTACATGTTGTAGAGGACCATTTGATGTTATCCGTAGAGTTGTGGAGGCTGANGGTTTTCGTGGCTTGTATAGAGGTTTTGGATTAACAGCTGTAACCCAGTCCCCAGCATCTGCCCTTTGGTGGGGTTCATATGGTGCAGCACAACACATAATTTGGAGGAGTTTGGGCTACAAGGATGATATGGAGAAGAAACCTTCACATGTGGAAATGGTGACTGTTCAGGCTACTGCAGGAATGGTGGCTGGTGCTTGTTCCTCTGTCATCACCACTCCCATAGATACTGTAAAAACACGCCTTCAGGTTATAGACAACTATGGTTCTGGAAGACCATCAGTACTGAAGACAGCAAGGACTCTCCTTAAGGAAGATGGATGGTGGGGATTTTACAGGGGGTTTGGACCAAGATTTTTAAATATGTCACTTTATGGAACAACCATGATTGTTACTTACGAACTGATAAAGAGATTATCAGTACAACCAAGTGTGAGGTCTTTTGCTTAAGAAGTGCAACCATACTGAGAAGGCAGAGAGAGAGAGAATCAAGCTTAATTTTGGCATGTCTAGCTTGTGTTGTGTTTCAGTTCAGGGACAGCAAACTGATAGATTTCTTCATCCTCAAGCACTGCATGATGCAGTATGGCAAAGCCTGATATAGGTCTCTTCTTTTCTATATTTTTAATGAAAACATAGCTTTTGTTTCTTAAAATCTGTAATACGGGAATTCTTGAATTTTTTTGAGGTGTTAGGGTAATGTGTGAAACATGGAGAATCATAGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	421821	424785	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001071.1	PF00153.22	Mito_carr	32	117	1.10E-12
Glyur000005s00001071.1	PF00153.22	Mito_carr	132	218	5.80E-15
Glyur000005s00001071.1	PF00153.22	Mito_carr	238	322	1.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.306
SRR1783600	control	0.340
SRR1783602	moderate drought stress	1.168
SRR1811619	moderate drought stress	1.052

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.058
DRR006520	Root Summer glycyrrhizin high producing strain	1.961
DRR006521	Root Winter glycyrrhizin high producing strain	14.967
DRR006522	Root Winter glycyrrhizin high producing strain	14.342
DRR006523	Root Summer glycyrrhizin low producing strain	1.875
DRR006524	Root Summer glycyrrhizin low producing strain	1.897
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.593
SRR2868004	Drought Stress (root)	1.935
SRR2967015	Control (root)	1.415

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.525
SRR9715740	Leaf	0.316
SRR9715741	Leaf	5.233
SRR9715739	Root	0.156
SRR9715742	Root	1.403
SRR9715743	Root	2.243

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.528
SRR8749028	MeJA induced 9h	6.890
SRR8749029	MeJA induced 9h	3.800
SRR8749030	Uninduced	6.062
SRR8749031	Uninduced	3.263
SRR8749032	Uninduced	7.365

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.755
SRR8400027	Control - Root	1.684