Gene detail

Gene detail information of Glyur000005s00001066

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G62270.1	HCO3- transporter family
NR	XP_003533117.1	PREDICTED: probable boron transporter 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9M1P7\|BOR2_ARATH	Probable boron transporter 2
trEMBL	tr\|I1L0M1\|I1L0M1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G03600.1}

Sequence

Transcript Sequence

>Glyur000005s00001066.1
GAAAAGTGTTCATATGGAGAGAGATGCTTGTTTGTTTCCAAGCCAGCTTGTCATAAACTGGCAAAACACGGCACTCTCCTCCTAATCATTTTGTCTTCAAATGCAACATTAACTTTCACCAAAACTATACCTTTCACCATCTTTTAACCCCACTTAACACTTCTCTCTCTCTCTTTCTCTTCTCCCCCTTCATTTTCAGTACTTTGATTTGATTCACTACGATACATTGCATCTACAGCAAATATCCCCTCCCTTCCAAATACCCATTAAAATTTTAGTTGTTTCATTGTTACCATTTCTGGGCTTAACCACATTTTTCATTATAATTTTATTTTTTCTACAAAGTTTGCTCTTTTCAATGACCAACGACCTTACTTTTCTCCCCTTTTAACTCACATTGTCGTCTATTTACTTCTTTTTTATTGGGGGAGTGTTCGGAGTTTCAACNCTCAACCTTTCTGTGTCCCCACAGTGTGAAAGTTCCTCCTTTTTTCCTTTGTCATTTTGATATTGTGCAATACTCCAGCTGGGTTTTGAAGCTTGGTCTATTCCTTGTAAGCTTATGTTCTATTTCTCATTGGACTAGATGAAGTAACGNTGTTGCCATTGGGGTTCCATTGAAGGGGTTTTATTACTTTATTTGCATTAATTATCTTATAAATCATAATGATTTATGTCCGCTTGCTTATTCTACCATAGTTGTGTAGTTATTGTTCTCCATTCTTGTGTTGCTCATAACACATGCATTGGTAAAAGCCAAGATTAACTGATTTAGTATAGTGCTGTTTCTGCAAATCTGTACTATTGTTAGAGCCAAAGAATATCTAAATCCTGGTAAAGTTTCCTTTTTTTTTTGGCCATAACTCCCTGATTAAGAAATTATGGAAGAGACATTTGTTCCATTTCGTGGAATTAAAAATGATCTTCAAGGGAGATTGACGTGTTACAAGCAAGATTGGATTGGTGGTCTCACTGCAGGCTTCAGGATATTAGCCCCTACCACATATATATTTTTTGCATCAGCAATTCCAGTTATTTCATTTGGAGAACAATTGGAAAGAGATACAGATGGAATACTCACTGCTGTGCAAACATTAGCATCTACTGCACTGTGTGGAATTATACACTCTATTATAGGAGGCCAGCCTTTGTTGATTCTTGGGGTAGCAGAACCAACTGTAATTATGTATACATTCATGTTCAACTTTGCCAAAAATAGGCCGGATTTGGGTTCGAAGCTCTTTCTAGCNTGGACTGGATGGGTATGTATCTGGACTGCCATCTTGTTGTTCCTACTGGCTATCTTGGGAGCTTGCTCCATCATCAACAGGTTCACTCGCATAGCCGGGGAACTCTTTGGCCTTCTTATTGCAATGCTCTTCATGCAAGAGGCTATTAAAGGTCTCATTAATGAGTTTCATATACCTGAGAGAGCAGACCTTGCATCAACCGAGTTTCAATCTTCATGGAGATTTGGAAATGGCATGTTTGCTTTGATTCTGTCCTTTGGACTTCTGCTTACAGCATTGAAAAGCCGAAAAGCAAGGTCTTGGCGATATGGATCAGGATGTTTACGGGGCTTAATAGCAGATTATGGTGTCCCATTGATGGTTCTGTTATGGACTGCTGTTTCTTATATACCAGCTGGGAGTATTCCAAANGGAGTCCCTAGGCGACTCTTCAGTCCAAATCCATGGTCCCCTGCATCTCAGCTTGCTCAGCAGAAAGAGTTCAACTTAAGAAAGCCACCTTCCTTCCATTATGATTTACTTCTTTTGGGATTCATGGTTATATTATGTGGACTAATTGGAATTCCCCCATCAAATGGTGTCATTCCACAATCTCCAATGCACACCAAAAGTTTAGCTACATTGAAGCACCAGTTACTTAGAAACCGGCTTGTTGCAACAGCTCGAAGTTGTATGAGAAAGCAAGAAAGCTTGGGACAAGTATATGGAAGTATGCAAGATGCTTACTGGCAGATGCAAACCCCTCTAGTTCACCAGGAATCTTCCTCTCGGGGATTAAAAGAGTTGAAAGAATCAACTATTCAATTGGCATCAAGCATGGGGAGTATAGATACNGCAGTTGATGAGTCAGTATTTGATGTTGAGAATGAAATTGATGACTTGTTGCCTGTTGAGGTTAAAGAACAACGAGTGAGCAACTTGCTCCAATCTTTGATGGTAGGAGGATGTGTAGCAGCAATGCCTTTCCTGAAAATGATTCCAACTTCTGTACTGTGGGGCTATTTCGCTTTCATGGCCATCGAAAANTTACCTGGCAACCAGTTCTGGGAACGGATTCTATTAATTTTCACCGCTCCAAGCAGAAGATACAAAGTTCTGGAGGAGTGCCATGCAACTTATGTGGAAACTGTCCCTTTCAAGACAACTGCAGTATTTACACTCTTCCAGACTGCATACTTGCTTGTTTGTTTTGGTATCACTTGGGTCCCAATAGCCGGGGTTCTATTCCCATTGATGATCATGCTTCTGGTTCCTGTGAGACAATACATTCTGCCCAAGTTCTTCAAAGGGGCACACCTTCAAGATTTAGANGCCGCAGAATATGAAGAAGTCCCAGCATTACCCTTCGACCTATCTACTGAAGGAGGGTTGAGCAGGACAGCTTCCATTGCAGATGANGGAGAGATTCTAGATGGAATCATCACCAGAAGCCGGGGTGAGGTCAGACGCATCTGCAGTCCAAAGGTGATGAGCTCCACTGTATCTGTAAAGCCATTCAAAGAGTTCACAACAAGTATTCAAAGTCCAGGGTTCCCAGATAAAGTATACAGCCCTCGGGTCAACCAACTAAGAGGAAATCATAGTCCTCGAGGCGGTGTTGGGAGAGGNCCATTTAGCCCTGGAGGAGAACCAAGGCCATCTAATTTGAGCAAAGGTGGTTGAAGTTGAACACTGACATCACATTTCTTGTTTGGTGCTTATGTCTGTTCTGTTCTGTAATGCAAGGATTGCTAGCAAAGGTGGCATGCCCCTTGCTTATTTTAACATCCGATTCTTGACAAAAGGTAATTGCTACAACATAAATTTAGTGTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	390580	396664	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006820 anion transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0005452 inorganic anion exchanger activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001066.1	PF00955.16	HCO3_cotransp	3	179	1.10E-28
Glyur000005s00001066.1	PF00955.16	HCO3_cotransp	420	510	5.90E-14
Glyur000005s00001066.2	PF00955.16	HCO3_cotransp	3	113	8.00E-20
Glyur000005s00001066.3	PF00955.16	HCO3_cotransp	296	386	4.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.699
SRR1783600	control	24.543
SRR1783602	moderate drought stress	16.549
SRR1811619	moderate drought stress	16.533

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.894
DRR006520	Root Summer glycyrrhizin high producing strain	29.640
DRR006521	Root Winter glycyrrhizin high producing strain	1.828
DRR006522	Root Winter glycyrrhizin high producing strain	1.906
DRR006523	Root Summer glycyrrhizin low producing strain	36.099
DRR006524	Root Summer glycyrrhizin low producing strain	36.157
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.922
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.896

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.027
SRR2868004	Drought Stress (root)	18.353
SRR2967015	Control (root)	12.423

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.200
SRR9715740	Leaf	8.774
SRR9715741	Leaf	12.745
SRR9715739	Root	15.547
SRR9715742	Root	43.754
SRR9715743	Root	39.587

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.957
SRR8749028	MeJA induced 9h	44.290
SRR8749029	MeJA induced 9h	34.935
SRR8749030	Uninduced	20.119
SRR8749031	Uninduced	3.292
SRR8749032	Uninduced	7.513

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.555
SRR8400027	Control - Root	37.609