Gene detail information of Glyur000005s00001057 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G30510.1 | 2.00E-166 | ribosomal protein S1 |
| NR | XP_004486520.1 | 0 | PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cicer arietinum] |
| COG | YP_001518848.1 | 2.00E-96 | 30S ribosomal protein S1 [Acaryochloris marina MBIC11017] |
| Swissprot | tr|P29344|RR1_SPIOL | 0 | 30S ribosomal protein S1, chloroplastic (Precursor) |
| trEMBL | tr|I1MGB0|I1MGB0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G14550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00005 | 353604 | 357159 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000005s00001057.1 | PF00575.18 | S1 | 94 | 163 | 3.60E-10 |
| Glyur000005s00001057.1 | PF00575.18 | S1 | 178 | 245 | 9.20E-13 |
| Glyur000005s00001057.1 | PF00575.18 | S1 | 256 | 326 | 6.10E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.651 |
| SRR1783600 | control | 16.511 |
| SRR1783602 | moderate drought stress | 17.689 |
| SRR1811619 | moderate drought stress | 17.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.565 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.872 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.925 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.355 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.986 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 88.924 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 88.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.434 |
| SRR2868004 | Drought Stress (root) | 17.465 |
| SRR2967015 | Control (root) | 17.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 95.126 |
| SRR9715740 | Leaf | 129.845 |
| SRR9715741 | Leaf | 75.996 |
| SRR9715739 | Root | 12.650 |
| SRR9715742 | Root | 13.293 |
| SRR9715743 | Root | 13.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.408 |
| SRR8749028 | MeJA induced 9h | 7.935 |
| SRR8749029 | MeJA induced 9h | 8.731 |
| SRR8749030 | Uninduced | 4.023 |
| SRR8749031 | Uninduced | 1.153 |
| SRR8749032 | Uninduced | 2.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.972 |
| SRR8400027 | Control - Root | 30.341 |