Gene detail

Gene detail information of Glyur000005s00001049.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47990.1	1.00E-90	gibberellin 2-oxidase 4
NR	XP_003594675.1	3.06E-179	Gibberellin 2-oxidase [Medicago truncatula]
COG	YP_004572412.1	4.00E-29	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9XHM5\|G2OX2_PEA	4.00E-126	Gibberellin 2-beta-dioxygenase 2
trEMBL	tr\|G7IL41\|G7IL41_MEDTR	1.00E-179	Plant gibberellin 2-oxidase {ECO:0000313\|EMBL:AES64926.1}

Sequence

Transcript Sequence

>Glyur000005s00001049.1
ATGGTGGTGGCTTCCCCAAATTCGATCCGAGAAGAAAAGGTTTTACCCATTGAACTTCCGGTGGTGGACCTATCAGCTGAGAGATCGATGGTGATGAAACTCATCGTGAAAGCGTGTGAAGAGTACGGTTTCTTCAACGTGATTAACCATGGTGTCCCTCATGACACCATTTCCAAAATGGAAGAAGCGGGTTTCGATTTCTTTGCAAAACCAATGGCCCAAAAGAAAAAGTCTTCCATAGCTGGTAATAATAACCCTTTTGGTTATGGCTGCAAGAACATTGGCATCAATGGAGACATGGGTGAGGTCGAGTACCTTCTCCTCAATGCTAATAACAATAATGCTCCTTCTAATTCCATTGCTGGTCCATCAAACTTCAGCTCTAGGGTGAGTGCATACAGAGATGCAGTGAGGGAGCTAGCATGTGAGATTTTGGAGCTAATGGCAGAGGGTTTGGGGGTCCCTGATACATTGGTTTTCAGCAGGTTGATCAGGGATGTTGATAGTGACTCAGTCCTCAGGCTCAATCACTACCCACCTATACCTATACCTATACCTATGCTTAACAAAGATTACTCCTGCAAGGATAGGGACAAGTCATCATCCCCTTCCTACAACCATACCAGTACCACCAAGGTAATTGGCTTTGGGGAGCATTCTGACCCTCAGATCCTCACCATCCTCAGATCCAACGATGTTGGTGGCCTCCAAATCTCTCTTCAACATGGTGTGTGGAACCCAGTCACCCCTGACCCCTCTGCTTTCTGTGTTAATGTGGGTGATCTCCTACAGGTTATGACAAATGGAAGATTTGTGAGCGTGAGACACAGGGCCGTGACCAACTCATACAAGTGTAGAATGTCGGTGGCATATTTTGGGGCTCCACCACTCCATGCCTGCATTGTTGCTCCCCCAGTTATGGTTACACCCGAGAGGCCCTCCCTCTATAAACCATTCACTTGGGATGAATACAAGAAAGTCACCTACTCTCTCAGGCTTGGAGACAGCCGCATTGACCTTTTCAGGAACTGCACTACTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	263641	273762	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04125	E1.14.11.13	EC:1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001049.1	PF14226.1	DIOX_N	19	94	5.70E-19
Glyur000005s00001049.1	PF03171.15	2OG-FeII_Oxy	170	293	3.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.147
SRR1783600	control	0.141
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.138
SRR2868004	Drought Stress (root)	0.035
SRR2967015	Control (root)	0.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.064
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.049
SRR9715742	Root	0.317
SRR9715743	Root	0.170

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.854
SRR8749028	MeJA induced 9h	0.114
SRR8749029	MeJA induced 9h	0.397
SRR8749030	Uninduced	0.092
SRR8749031	Uninduced	0.167
SRR8749032	Uninduced	0.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.353
SRR8400027	Control - Root	0.275