Gene detail information of Glyur000005s00001043 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49610.1 | 3.00E-145 | F-box family protein |
| NR | XP_006586878.1 | 0 | PREDICTED: F-box protein At5g49610-like isoform X2 [Glycine max] |
| Swissprot | tr|Q9FGY4|FB341_ARATH | 0 | F-box protein At5g49610 |
| trEMBL | tr|I1L0N3|I1L0N3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G03750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00005 | 227422 | 228510 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000005s00001043.1 | PF12937.2 | F-box-like | 12 | 45 | 2.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.022 |
| SRR1783600 | control | 6.095 |
| SRR1783602 | moderate drought stress | 4.357 |
| SRR1811619 | moderate drought stress | 4.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.389 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.908 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.347 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.081 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.503 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.252 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.889 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.466 |
| SRR2868004 | Drought Stress (root) | 15.335 |
| SRR2967015 | Control (root) | 14.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.699 |
| SRR9715740 | Leaf | 8.903 |
| SRR9715741 | Leaf | 7.840 |
| SRR9715739 | Root | 8.819 |
| SRR9715742 | Root | 6.152 |
| SRR9715743 | Root | 7.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.829 |
| SRR8749028 | MeJA induced 9h | 17.574 |
| SRR8749029 | MeJA induced 9h | 9.645 |
| SRR8749030 | Uninduced | 18.449 |
| SRR8749031 | Uninduced | 19.156 |
| SRR8749032 | Uninduced | 8.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.560 |
| SRR8400027 | Control - Root | 9.752 |