Gene detail

Gene detail information of Glyur000005s00001034

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06580.1	0	Mevalonate/galactokinase family protein
NR	XP_003550769.1	0	PREDICTED: galactokinase isoform X1 [Glycine max]
COG	YP_003164364.1	4.00E-39	galactokinase [Leptotrichia buccalis C-1013-b]
Swissprot	tr\|Q9SEE5\|GALK1_ARATH	0	Galactokinase
trEMBL	tr\|I1MRT3\|I1MRT3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G03990.1}

Sequence

Transcript Sequence

>Glyur000005s00001034.1
CGTGTGTGTAGAGTTGCCGACAATTGAATCGCGATTTTTGGAAGGAAAAAAAAATAATGGCGATACACGAAGAGCCTCCGGTTCCGGTTTTCGAAACTCTGGAACCCGTATACGGTGGAGGTTCTCACCTAGAAGAAGCTCAGCTTCGTTTCGATAACTTGAAGTCTAAATTTCTCAAAATCTTCGGTCACCATCCTCAACTCTTCGCTCGCTCACCTGGGAGAGTGAACTTGATCGGGGAACACATTGACTATGAGGGGTATTCGGTGTTGCCCATGGCAATTCGGCAAGACACGATCGTGGCCATTCGGAAAAACGAAGGCCAAAGTTTTCTTAGGATTGCTAATGTCAATGACCAAGTATATGCCACGTGTACTTATCCTGCTGATCCTAACCAGATGCTTGACTTGAAGAATCACAAATGGGGCCACTATTTCATTTGTGGGTACAAAGGTTTTCATGACTACGCAAAATCGAAGGGAGTGGATGTTGGTCAACCGGTTGGGCTTGATGTCCTTGTTGATGGAACAGTTCCCACAGGTTCTGGACTATCAAGCTCTGCGGCATTTGTTTGTTCTTCCACAATAGCTATTATNGCTGCTTTTGGTGTGAACTTTCCAAAGAAAGAAGTTGCACAACTTACATGTGAATGTGAACGACATATTGGTACACAATCTGGGGGGATGGATCAGGCAATCTCTGTCATGGGAAAAGCTGGGTTTGCAGAGCTGATTGATTTCAATCCCATCCGTGCAACGGATGTGGAACTTCCTGCTGGTGGGACTTTTGTGATAGCTCATTCTTTGGCTGAGTCTCAGAAAGCTGTTACTGCTGCAACAAATTATAATAATAGGGTTCTTGAATGTAATTTGGCTTCTATTGTGCTTGGGATTAAACTAGGAATGAAACCACAAGAGGCAATGTCAAAAGTGAAAACACTGTCTGATGTTGAAGGCTTATGCATATCATTTGCTGGTAGTCGTAACTCTTCTGATCCTGTCCTTGCTGTCAAGGAATTTTTGAAAGAAGAACCTTATACAGCTAAAGAAATTGAAGAAATTATTGGGGAAAATTTGATCACATCTTTTAGCAGTAATCCAGCTTATTTGGATGTCATAAAAGTGGCTCAGCAATACAAGTTACATCAGAGAGCTGCACATGTGTATTCAGAAGCCNAAAGGGTACATGCTTTCAAGGATATTGTATCATCAAAATTAAGTGATGAGNAGAAACTAAAGAAACTTGGTGACCTTATGAATGACAGTCATCATAGCTGCAGTGTTTTATATGAATGCAGCTGTCCAGAGTTGGAAGAACTCGTAAATANTTGTCGTGACAATGGTGCTTTGGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTCTGGTGAAAGAGGGCATTGTCCCACAATTTATCCATAATTTGAAGGAACGTTTCTACAAAGCTAGAATTGACAAGGGCGTGATCAAGGAGAACAACGTTGACCTTTATGTATTTGCTTCTAAGCCATCAAGTGGTGCAGCCATTTTCAAGTTTTAGAATCATTTCCTTAACCCATTTCACTTTTAATGGCTGAAAACATCCAGGTTATACCATATGCAAATTCTGATGAAATAAGATTAAAATGGTTCCCTAATTGTCATTAAATTGCTTCTGATATGCATATATATTATGGATCTAGACGAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	179937	185746	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006012 galactose metabolic process

GO:0008152 metabolic process

GO:0046835 carbohydrate phosphorylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0004335 galactokinase activity

GO:0005524 ATP binding

GO:0016301 kinase activity

GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001034.1	PF10509.4	GalKase_gal_bdg	37	87	6.00E-24
Glyur000005s00001034.1	PF00288.21	GHMP_kinases_N	152	219	1.60E-15
Glyur000005s00001034.1	PF08544.8	GHMP_kinases_C	393	465	1.30E-13
Glyur000005s00001034.2	PF10509.4	GalKase_gal_bdg	37	87	5.50E-24
Glyur000005s00001034.2	PF00288.21	GHMP_kinases_N	152	219	1.50E-15
Glyur000005s00001034.2	PF08544.8	GHMP_kinases_C	365	438	9.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.391
SRR1783600	control	2.469
SRR1783602	moderate drought stress	1.605
SRR1811619	moderate drought stress	1.557

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.534
DRR006520	Root Summer glycyrrhizin high producing strain	5.626
DRR006521	Root Winter glycyrrhizin high producing strain	10.743
DRR006522	Root Winter glycyrrhizin high producing strain	10.323
DRR006523	Root Summer glycyrrhizin low producing strain	2.779
DRR006524	Root Summer glycyrrhizin low producing strain	2.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.012
SRR2868004	Drought Stress (root)	4.120
SRR2967015	Control (root)	3.476

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.507
SRR9715740	Leaf	2.846
SRR9715741	Leaf	3.761
SRR9715739	Root	1.657
SRR9715742	Root	5.517
SRR9715743	Root	4.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.882
SRR8749028	MeJA induced 9h	9.138
SRR8749029	MeJA induced 9h	6.069
SRR8749030	Uninduced	10.731
SRR8749031	Uninduced	8.743
SRR8749032	Uninduced	4.742

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.079
SRR8400027	Control - Root	17.107