Gene detail

Gene detail information of Glyur000005s00001005.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06620.1	0	PAS domain-containing protein tyrosine kinase family protein
NR	XP_003594732.1	0	Protein kinase-like protein [Medicago truncatula]
COG	YP_001958461.1	6.00E-44	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	7.00E-111	Serine/threonine-protein kinase EDR1
trEMBL	tr\|G7IFW1\|G7IFW1_MEDTR	0	PAS domain tyrosine kinase family protein {ECO:0000313\|EMBL:AES64983.1}

Sequence

Transcript Sequence

>Glyur000005s00001005.1
TCTATTCTCTTCTTTCTTCTTTCTAAATTCTCAAGTGTGAAGCTTTGTATTGTGGGCACTGCCGTTAATTCAGAGAGAGATGNAAACCCCAGAAGCAGAAGGAGAGCTTCTGAAGAAGATTGAGAAGCTAGAAGCTGGTCATGCTCACCTCAAGCAAGAAATGTCGAAGCTGAAGCTTTCCCAACGCCGCAGGTCTCACTCTTTATCACCACAGCGTTCAAGGTTAGGTGCTTCTGCTTCTGCTTCTGCTTCTGCGTGCAACAACAGAGGCTTCTCTTCACCCCTTCAGAGAGAAAGTCGCAGCCACCACCACGATGATCCTCAACAACACCAAAATGGTGGCAAGTATCTCAATATCTTGCAGTCAATTGGCCANTCTGTTCATATATTGGATCTTCAATGTCGTATTATATACTGGAACCCCAGTGCTGAAAATCTGTATGGTTATGCAGCAGCAGAAGTGCTTGGACAGGATGGGATTGAGGTGCTTGTAGACCCCAATGAATTTAACTTAGCCAATGATATATTCAACCGTGTTAAAATGGGAGAGAGTTGGACTGGTCAGTTCCCTGTCAAGAATAAGATGGGGNAAAAGTTTGCAGCTGTGGCAACCAATACACCTTTCTATGATGATGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCAGTGATTCAAGACCCTTTCTTCAAACCACAGTTCCCTTAGCAGGTGGGAATAATGCAGAACCGGATTCAGGTTCCAATTGTCCTAGAAGTGGCATTACAAGTAAAATAGGACTTGATTCTCAGCAGCCAGTTCAAGTTACTCTTGCATCAAAAATTTCAAATTTGGCCTCAAAGGTGAGTAACAAAGTCAAGTCTAAAATGCGGACTCGAGAAAATAATGTTGATGGAGAAGGGGGGAGCGGAGAGAGTCATCATTCCGAGNATGGTCTTTCTGACCATAGAGAGGATGGTAATTCCAGTGGAGCTAGCACACCCAGAGGAGAGGTGCCGCCATCTCCTTTTGGTGTCTTTTCTCATGTCGAAGGGAAATTCCAAGGAAAAACTATGAGAGACTCTGGCAATATGAGTGAAGTAAAACCTATGCACAAAATCATAACATCTAAGGCTGAAGCATGGATTCAAAAGAAAACATCATCATGGCCGTGGAGAGCCAATGACCAGGAAGGATCCAACGAAAGGAATGTTAGTGTTGCTTGGCCTTGGTTGCAGGGTGATCAAGAGAAAGAGCCAGTTAATCAAAGGAATCTGTCTTCTGGGTCGAAGCCAGAAAGCCGGGCAGGCGAAAGTAATCAACCTGTCAATAATGAGGCTTCAGGATCTTGGTCCTCTTTCAATGTTAACAGCACAAGTAGTACCAGCAGTTGTGGGAGTAGCAGCAGTTGTGCTGCCAATAGTAAAGTGGATGTTGACACTGATTGCTTGGATTATGAAATCTTGTGGGAGGACCTGACAATTGGAGAACCAATTGGGCAAGGTTCATGTGGGACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATACAGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGNCTTCGCCATCCAAATATTCTTCTCTTTATGGGGGCAGTGACTTCACCTCAGCGTCTATGCATTGTAACAGAGTTTCTCCCACGTGGAAGCTTATTTCGTTTGCTCCAGCGGAACACATCCAAATTTGACTGGAGACGGCGAGTTCATATGGCCTTAGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCTATCATCCATCGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGTATTAAGCATGAAACATATTTGACGACNAAGACTGGAAAGGGAACGCCTCAATGGATGGCACCGGAAGTTCTTCGTAATGAACCCTCAAATGAAAAGTCTGACGTTTACAGCTTTGGGGTGATAATGTGGGAACTTGCAACTGAAAAAATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGAGCTGTAGGGTTTATGAACCATCGGCTAGAAATTCCTGAAGATGTTGATCCACAGTGGGCTTCTATAATNGAGAGTTGCTGGCATAGTGATCCGGCATGTCGACCAACGTTCCAGGAACTGCTGGAAAGGCTGAGAGAAATGCAGAGGCGGTATACCATTCAGTTCCAGGCAGCCAGATCTGCTGGTGGGGAAGGCACTCAAAGGGAGTCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	36480	41505	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004871 signal transducer activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001005.1	PF13426.1	PAS_9	101	198	2.10E-14
Glyur000005s00001005.1	PF07714.12	Pkinase_Tyr	459	711	1.70E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.256
SRR1783600	control	8.331
SRR1783602	moderate drought stress	12.171
SRR1811619	moderate drought stress	12.100

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.390
DRR006520	Root Summer glycyrrhizin high producing strain	8.496
DRR006521	Root Winter glycyrrhizin high producing strain	4.936
DRR006522	Root Winter glycyrrhizin high producing strain	4.507
DRR006523	Root Summer glycyrrhizin low producing strain	7.667
DRR006524	Root Summer glycyrrhizin low producing strain	7.911
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.400

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.189
SRR2868004	Drought Stress (root)	21.362
SRR2967015	Control (root)	27.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.015
SRR9715740	Leaf	16.322
SRR9715741	Leaf	14.824
SRR9715739	Root	3.802
SRR9715742	Root	12.580
SRR9715743	Root	10.186

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.328
SRR8749028	MeJA induced 9h	12.449
SRR8749029	MeJA induced 9h	4.938
SRR8749030	Uninduced	3.996
SRR8749031	Uninduced	2.018
SRR8749032	Uninduced	2.450

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.135
SRR8400027	Control - Root	20.053