Gene detail

Gene detail information of Glyur000005s00001001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18790.1	0	phytochrome B
NR	XP_004486544.1	0	PREDICTED: phytochrome B-like [Cicer arietinum]
COG	YP_007123595.1	4.00E-74	bacteriophytochrome (light-regulated signal transduction histidine kinase) [Microcoleus sp. PCC 7113]
Swissprot	tr\|P42499\|PHYB_SOYBN	0	Phytochrome B
trEMBL	tr\|C7FHN7\|C7FHN7_MEDSA	0	Phytochrome B {ECO:0000313\|EMBL:ACU21557.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000005s00001001.1
ATCAGGATGAGATATTTTTTNAAAACTTTTTCAAACAGCAAGCAACTGTAACTATTTCCAAACAATGAAGTCACTGAGTAAAGCTAATCCAAATCCGGTAAGGTAGTAAAGGGGATTGGTTGGTTGCCGCCGTAAATCGCAATCAGAGCTGAGCAGAGCAGAGGGAGAGGCTTCTTCTATATCGAGCAATCGCGGGCGGGCAAAGAAAGACGCCAAACACCCTCACACTGCAACTGTCCCTCTCATTACTCCTCCCATCACTCTTCCCTCATCCAAACAAACAAAAAAAACCATCATCACAATTTTCTTCCTTCTTCTGTTTTTTTTTAGTACTAAAATCAATCAATGGCATCAGCAAACAGCAGGGGAGCAGCAAATGCTAATGCCTCCTCAGTATCACAACAACAACAACAACAACAACAACAGCAAGTTCATCACCACAGTTGGAGGACAACAACAGCAGCAACAACAGCAACAACAACAACAACAAAGGGTGGAAGCGAGGAAGAGAAGAAAAGAGGAACAGGAACAGTAACAGAATCGATGACGATGAGGAAGGCCATCGCACAGTACACAGAGGACGCAAGGCTCCACGCGGTGTTCGAACAATCCGGCGACACCTTCGACTACTCCCAATCCCTCCGTGTCACGGCGTCGGAATCCGTCCCGGAGCAACAGATCACCGCCTACCTCGCCAAGATCCAGCGTGGCGGTGCCATCCAACCCTTCGGCTCCATGATCGCCGTCGACGAACCTTCCTTCCGAATCCTCGGCTTCTCNGAAAACGCCCGCGACATGCTCGGAATCTCCCCTCAGTCTGTCCCTTCCCTCGACGACGACGACGGTTCCTCTTCTTCTTCCTTCTCTTTATCCTTCGGCACCGATGTTCGCTCCCTCTTCACTCACTCCAGCTCAATCCTCCTCGAGAAGGCCTTCGCTGCACGCGAAATCAGCCTCATGAACCCTATCTGGATCCACTCTCGCTCCACCGGGAAACCTTTCTACGGCATCCTCCACCGCATCGACGTTGGCGTCGTCATCGATTTGGAACCCGCCCGATCTGAGGATCCCGCNCTTTCCATCGCCGGCGCTGTGCAGTCTCAGAAGCTCGCCGTAAGGGCGATTTCGCAGCTCCAGTCTCTCCCCGGCGGTGATGTTAAGCTCCTATGTGATGCCGTTGTTGAGAGTGTTAGGGAATTGACCGGTTATGATAGGGTTATGGTGTATAGGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTATCCTGCNACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAGGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCCCCTGTTAGGGTGGTTCAGGATGAGGCTCTATTGCAGCCCNTTTGTTTGGTTGGGTCCACACTTCGTGCCCCTCATGGTTGCCATGCTCAGTACATGGCAAACATGGGATCAATTGCTTCTCTGGTGATGGCTGTTATCATTAATGGGAATGATGAGGAAGGTGGTGGTGTTGGGATTGGCGGCCGCAGCGGCTCGATGAGGCTGTGGGGTCTTGTTGTTTGCCACCACACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTCATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGCTTGCTGTGCAGTNGTTGGAGAAGCGGGTTTTGAGGACGCAGACTTTGTTGTGTGATATGCTGCTTAGGGATTCTCCTACTGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTGATGGGGCTGCTCTGTACTACCAGGGGAACTATTACCCCTTAGGTGTTACCCCGACTGAGTCTCAGATAAGGGATATCATAGAGTGGTTGCTGGCATTCCATGGTGATTCGACGGGCTTGAGTACCGATAGTTTGGGTGATGCNGGCTATCCTGGGGCTGCTTCTCTTGGGGATGCGGTTTGTGGGATGGCTGTTGCTTATATCACGGAAAAGGATTTTCTTTTCTGGTTCAGGTCTCATACNGCGAAGGAGATCAAATGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCATTTTTAGAAGTGGTGAAAAGCCGCAGTTTGCCGTGGGAGAATGCAGAAATGGATGCAATTCACTCTTTGCAGCTCATCCTGCGAGACTCGTTTAAGGAGGCTGAGAACAGCGATTCTAAGGCTGTTGTGCATTCCCATTTGGCGGGGCTAGAGTTGCAAGGGGTAGATGAGCTAAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACCGCCACTGCTCCCATATTTGCTGTTGANGTTGATGGCAACATAAATGGGTGGAATGCCAAAGTTTCAGAATTGACGGGACTCCCAGTAGAGGAGGCTATGGGGAAGTCTTTGGTTCATGATCTTGTATATAAGGAATCTCAAGAAATTGTGGACAAGCTTCTTTTTTGTGCTTTAAAAGGTGAAGAAGANAAGAATGTTGAGATGAAATTGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGTTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACCGNTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACACAGTCCAAATCCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCCATGGAAAAGCTTNCTGGTTGGGGCCGTGCAGATGTCATTGGAAAATTGTTGGTAGGAGAGGTTTTTGGTAGTTGCTGTCAGTTGAAGGGTTCAGATGCAATAACAAAGTTCATGATTGTCTTGCACAATGCACTTGGTGGACAAGACACAGACAAATTCCCATTTTCATTTCTTGACAGGCATGGGAAGTATGTGCAAACTTTCTTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGGGCTTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCACTGAAGGTCCAGAGACAGCAGGAGAAGAGTTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGATTTACAAACTCTCTTTTGGAGGCTACGGGCCTGACTGATGAGCAAAAGCAATTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTGAAGATAATACGGGACATTGATCTGGAAAGCATTGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCNGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATTTGGTTCGTTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATTTATGTCCAAGAATAAAACAAATTTCAGATGGGCTCACTCTTCTGCATGCTGAATTTAGGATGGTGTGTCCTGGTGAAGGTCTTCCTTCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGGCTGAGCATGAGCAGGAAGATCATAAAGTTAATGAATGGCGAAGTCCAATATGTTAGGGAGGCAGAACGGTGCTACTTCTTTGTTCTTCTTGAACTACCGGTGACACGGAGAAGCTCTAAAAATGTAAATTAGGCGTTGTACAACTGCAAGATTAAAGAGCAGGCACTACCTCTCATGTTGACCATTAGATAGTTTGTTCAGATTATGCTCACCTAACAAAGCAAGTTAAGGTTTTTGAACAAGCTGATTCTGCCCAGTTATCCCAGTCACATGTAATTCTACCAAGTTGGATTGTTATTTTGCACCCTGATAAAACGTGTTCAGTACAAGCATGAGTGGCTGTTGATTTGTAGCTAAATGTAACCTTAAATCTTACTGATAAAGTAATGGCAGAGTTGATGAAATGCTATGTCGCCAATGTGTACATCTTCATGGCCAAGTGGGTGTCCTGCAACATTTTTCAAGCAAATGCTTACATNATTAGCAGCTGCAATGGACTCCACTCCATCGTTGGATTGAACTGCATCCATCTCCTGCTTTGTTCTCTGTTCAAGTAACTGCTTGTACCTTTTTTTTCCAAGCTTGCAAATAATTGTAAAATCTGNCTGCAACAGGGTTTGCTCCCTGCAACTGCAATGTTGCTTTTCTACTCCCCACCTTATTGTTTTTTGCAGCATGTACATCCCTTACTTATCTGTAATCTGTAATAAAAGCTGGGTT

Protein Sequence

>Glyur000005s00001001.1
MASANSRGAANANASSVSQQQQQQQQQQVHHHSWRTTTAATTATTTTTKGGSEEEKKRGTGTVTESMTMRKAIAQYTEDARLHAVFEQSGDTFDYSQSLRVTASESVPEQQITAYLAKIQRGGAIQPFGSMIAVDEPSFRILGFSENARDMLGISPQSVPSLDDDDGSSSSSFSLSFGTDVRSLFTHSSSILLEKAFAAREISLMNPIWIHSRSTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDAVVESVRELTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFRQNRVRMIVDCHASPVRVVQDEALLQPXCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGGGVGIGGRSGSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQXLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEAENSDSKAVVHSHLAGLELQGVDELSSVAREMVRLIETATAPIFAVXVDGNINGWNAKVSELTGLPVEEAMGKSLVHDLVYKESQEIVDKLLFCALKGEEXKNVEMKLRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTXQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLXGWGRADVIGKLLVGEVFGSCCQLKGSDAITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALKVQRQQEKSCFARMKELAYICQEVKNPLSGIRFTNSLLEATGLTDEQKQFLETSAACEKQMLKIIRDIDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNLVRYAPSPDGWVEIHLCPRIKQISDGLTLLHAEFRMVCPGEGLPSELIQDMFHNSRWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFFVLLELPVTRRSSKNVN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00005	25297	31223	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0007165 signal transduction

GO:0009584 detection of visible light

GO:0009585 red, far-red light phototransduction

GO:0017006 protein-tetrapyrrole linkage

GO:0018298 protein-chromophore linkage

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0005515 protein binding

GO:0009881 photoreceptor activity

GO:0042803 protein homodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000005s00001001.1	PF08446.6	PAS_2	114	237	1.70E-43
Glyur000005s00001001.1	PF01590.21	GAF	273	453	7.30E-39
Glyur000005s00001001.1	PF00360.15	PHY	465	641	4.00E-72
Glyur000005s00001001.1	PF00989.19	PAS	671	786	7.40E-22
Glyur000005s00001001.1	PF00989.19	PAS	802	921	5.00E-21
Glyur000005s00001001.1	PF00512.20	HisKA	947	1007	1.90E-10
Glyur000005s00001001.1	PF02518.21	HATPase_c	1055	1157	1.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.992
SRR1783600	control	28.946
SRR1783602	moderate drought stress	49.657
SRR1811619	moderate drought stress	49.558

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.867
DRR006520	Root Summer glycyrrhizin high producing strain	31.313
DRR006521	Root Winter glycyrrhizin high producing strain	20.850
DRR006522	Root Winter glycyrrhizin high producing strain	20.227
DRR006523	Root Summer glycyrrhizin low producing strain	27.477
DRR006524	Root Summer glycyrrhizin low producing strain	27.592
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.114
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.201

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.046
SRR2868004	Drought Stress (root)	24.815
SRR2967015	Control (root)	31.815

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.668
SRR9715740	Leaf	14.454
SRR9715741	Leaf	14.818
SRR9715739	Root	10.121
SRR9715742	Root	30.264
SRR9715743	Root	27.608

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.294
SRR8749028	MeJA induced 9h	14.287
SRR8749029	MeJA induced 9h	6.818
SRR8749030	Uninduced	8.524
SRR8749031	Uninduced	3.739
SRR8749032	Uninduced	3.611

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.226
SRR8400027	Control - Root	33.078