Gene detail information of Glyur000005s00001000 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02650.1 | 3.00E-12 | Ribonuclease H-like superfamily protein |
| NR | ABO80459.1 | 3.13E-27 | RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] |
| trEMBL | tr|A4PSD6|A4PSD6_MEDTR | 1.00E-27 | RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H {ECO:0000313|EMBL:ABO80459.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00005 | 22649 | 24669 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000005s00001000.1 | PF13456.1 | RVT_3 | 215 | 251 | 4.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.271 |
| SRR1783600 | control | 0.354 |
| SRR1783602 | moderate drought stress | 0.494 |
| SRR1811619 | moderate drought stress | 0.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.118 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.211 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.049 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.047 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.193 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.311 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.138 |
| SRR2868004 | Drought Stress (root) | 0.286 |
| SRR2967015 | Control (root) | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.032 |
| SRR8749028 | MeJA induced 9h | 1.219 |
| SRR8749029 | MeJA induced 9h | 1.562 |
| SRR8749030 | Uninduced | 14.361 |
| SRR8749031 | Uninduced | 23.319 |
| SRR8749032 | Uninduced | 25.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.034 |
| SRR8400027 | Control - Root | 0.044 |