Gene detail information of Glyur000004s00000501 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02390.1 | 7.00E-41 | Protein of unknown function (DUF3741) |
| NR | XP_006597272.1 | 0 | PREDICTED: MAR-binding filament-like protein 1-like isoform X1 [Glycine max] |
| Swissprot | tr|F4HSD5|TRM32_ARATH | 1.00E-26 | Protein TRM32 |
| trEMBL | tr|K7M9E9|K7M9E9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G04320.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 738249 | 742541 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000501.1 | PF14309.1 | DUF4378 | 619 | 779 | 6.60E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.306 |
| SRR1783600 | control | 1.392 |
| SRR1783602 | moderate drought stress | 2.514 |
| SRR1811619 | moderate drought stress | 2.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.265 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.340 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.979 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.629 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.950 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.978 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.691 |
| SRR2868004 | Drought Stress (root) | 33.575 |
| SRR2967015 | Control (root) | 34.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.978 |
| SRR9715740 | Leaf | 10.461 |
| SRR9715741 | Leaf | 18.536 |
| SRR9715739 | Root | 0.505 |
| SRR9715742 | Root | 2.859 |
| SRR9715743 | Root | 2.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.515 |
| SRR8749028 | MeJA induced 9h | 23.025 |
| SRR8749029 | MeJA induced 9h | 4.636 |
| SRR8749030 | Uninduced | 32.551 |
| SRR8749031 | Uninduced | 38.378 |
| SRR8749032 | Uninduced | 14.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.065 |
| SRR8400027 | Control - Root | 6.623 |