Gene detail

Gene detail information of Glyur000004s00000500

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28900.1	9.00E-42	outer plastid envelope protein 16-1
NR	XP_009588682.1	9.90E-80	PREDICTED: outer envelope pore protein 16, chloroplastic [Nicotiana tomentosiformis]
Swissprot	tr\|Q41050\|OEP16_PEA	1.00E-72	Outer envelope pore protein 16, chloroplastic
trEMBL	tr\|A0A067KEE6\|A0A067KEE6_JATCU	3.00E-79	Uncharacterized protein {ECO:0000313\|EMBL:KDP34497.1}

Sequence

Transcript Sequence

>Glyur000004s00000500.1
AACTTCTCTTAAATTTTGTTTAATCCACCCTGACCGACATGGTGTGCCTCGTAGCGAAAATAATTCTCTTTCAGATCTCAATGCATACACATGATAGTACCCGTTTTCATTTTTAAAAAAGTGGCATTCATTACCAAACAAAATTGATATCGTAGCATATCCAAGTAAGCCAATAAAAGATCTCCACCATATCTCCACCTTTCCATAACATCTGAATCGAGTAATCAATCAAGTTGTTACTACTACTACTCACTAACAGTCACTGAAAACAAAGCAAAGGAACGAAGAAGAAGAAGAAGTGTGAGTGAGTGAGCGAGTGTGGGAATTGGAAACATGCCTATCAGCAGGTTTTCAGGGTCAGTATCTAGTCCCAAGGTGGACGTGATGATAGACATGGGCAATCCATTGCTAAACCTCACCGTTGATGGTTTTTTGAAGATTGGAACCGTTGCTGCCACGCGGGCGGTTGCTGAGGATACCTATCATATTCTCCGAAAGGGAAATATCTCTAAACATGATTGCGAGAAAACGATAGTCTTGTTGCAGCTGAAGAAGATGTGTAAAGAAGGTGCATACTGGGGAACTGTGGCTGGCGTGTATGTTGGACTGGAATATGGGGCAGAGAGGATCCGTGGCACCAGAGACTGGAAGAATGCAATGATTGGGGGTGCAGTAACCGGGGCTCTGATATCTGCAGCCAGCAACAACAAAAAAGACAAGGTTGCAATAGATGCCATTACAGGGGCAGCTGTTGCTACTGCTGCAGAATTCATAAATTACCTTACCTGAATGAATGAAACTGTATTGCATGTTTTGAAAAGGGATTGCAGACTCAGTCTCTTTTGTCATCATCTGTATCGGTACCATATTAATGTTGATGCAATTACTTCTAAGATATGTTGGTTATTTAGCTTTATGTTTTTTTTTGGGTCATGTATTTAGCTTTATGTTGAACCTATGTTTTGATCAATAATACACTGGCCCATCGGCTGTCTCCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	734943	737325	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000500.1	PF02466.14	Tim17	69	148	1.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	417.343
SRR1783600	control	424.845
SRR1783602	moderate drought stress	177.109
SRR1811619	moderate drought stress	179.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	347.028
DRR006520	Root Summer glycyrrhizin high producing strain	345.879
DRR006521	Root Winter glycyrrhizin high producing strain	101.105
DRR006522	Root Winter glycyrrhizin high producing strain	98.576
DRR006523	Root Summer glycyrrhizin low producing strain	155.112
DRR006524	Root Summer glycyrrhizin low producing strain	156.378
DRR006525	Leaf Summer glycyrrhizin high producing strain	227.124
DRR006526	Leaf Summer glycyrrhizin high producing strain	229.595

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	138.390
SRR2868004	Drought Stress (root)	56.576
SRR2967015	Control (root)	53.345

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	84.060
SRR9715740	Leaf	106.189
SRR9715741	Leaf	77.405
SRR9715739	Root	182.081
SRR9715742	Root	465.328
SRR9715743	Root	409.096

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.963
SRR8749028	MeJA induced 9h	3.803
SRR8749029	MeJA induced 9h	7.440
SRR8749030	Uninduced	0.951
SRR8749031	Uninduced	0.498
SRR8749032	Uninduced	2.710

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	950.631
SRR8400027	Control - Root	1170.360