Gene detail

Gene detail information of Glyur000004s00000497

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28930.3	2.00E-169	protein kinase 1B
NR	BAE71262.1	0	putative protein kinase APK1A [Trifolium pratense]
COG	YP_001958461.1	2.00E-26	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|P46573\|APK1B_ARATH	0	Protein kinase APK1B, chloroplastic (Precursor)
trEMBL	tr\|Q2PEU0\|Q2PEU0_TRIPR	0	Putative uncharacterized protein {ECO:0000313\|EMBL:BAE71262.1}

Sequence

Transcript Sequence

>Glyur000004s00000497.1
CCCGTGGCTGTGTTGTGTGTGTGTGAGAGAGAGTGGAATTTTCTTTCTAATGAGATAGGATAGGAGAGAGGGGACTTTCACTTTGATGCTTGCAAATAGCAGTGAGTGAAGCATAAAGATTGTGATGGAAGGAGCGGGGCCATCGAGACCAATATAGAGAGGGGTCCATTGAAACCATCAATGCCACTGGAGTCTCCATACCCACCTTCCTTGTTCCTTTCCAACTCTCCCTCTCTTCTATTTACTATTCTCATCCAATCTCTTTAACCCAACGCAAGGGTCTCTCTCTCTCTCTCAATAATAGCTTCCTCAAACCACCCAGCACACCTCAACAGCTAATATAATAACTCTCTTTCTATCTCTCTGTTTCTCTCTTTCTCTGTGTTTGGTTTGGAGTCAGGTTCACTGCAAGGTGTGAACAGCTACCTATGTTGTGTTGGATATTGCGTTCTCTGTTTCTGTGATTGCGATCTGCAGACAACAACACAAACAAGACTCTTCAACATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCTTATAACACTGGGTTAAATTCAAAGAACGCGAGTACAAATGGAAATGATCTCAGCCGTGCAAACAGTAAGGGTTCGGTTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTAAAGAGCTACACTTTAGCGGAACTAAAGGCAGCCACTAGAAATTTCCGTCCAGACAGTGTGTTGGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAACACATTGGCTGCTGCCAAACCTGGCACTGGCATTGTTATTGCTGTCAAAAGACTTAATCAAGAAAGCTTCCAGGGTCACAGGGAGTGGTTGGCCGAAGTCAACTATCTTGGACAGTTTTCTCATCCTCATCTGGTGAGATTGATTGGGTATTGCCTTGAAGATGAACACCACCTTCTCGTCTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTATTCAGGAGAGGTTCATATTTTCAACCTCTTTCTTGGAGCCTCCGTGTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACGGTGGTGAAACAAAAGTTATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAATTATACTGCAAAGCTTTCTGATTTTGGGCTGGCAAAGGATGGTCCAACAGGTGACAAAAGCCATGTCTCCACCAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCCACTGGTCATCTTACTGCTAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTGGAAATGTTATCTGGTAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAACTTGGTGGAATGGGCTAAACCTTACCTGGCTAACAAACGCAAGGTTTTCCGCGTGTTAGACAGCCGGCTCGAAGGGCAGTATTCAACAGATGAGGCCTACAAGGTAGCCACCCTTGCGTTGCGATGCCTATCAAGAGAATCTAAGTTCAGGCCAAACATGGATGAGGTTGTTAAAANTTTGGAGCAGCTGCAAGTTCCCAATGTAAATGGAGGCAATCGAAATCCCTCTGTTAATGTGCATCGTGCTCGGAGAAGAAGTGCTGATGATGTTAGGAGGACCCCCACATCTTATCCCCGGCCCTCTGCATCCCCTCTCTATACTTGAAGTTGCAAAATACACAACCTTCAAACTTAACAAAGCTGAATGTCCTGTGGCCCGACCAGGGAAATCACCGTGCAGGATTTGCTGGCGATCTTGTCCATGAACCCAGGCACCTGTACATATAATATTTCAGCTAATATATTCAAAACAAAGNTTCTCTCTTGGCATTTATAGGTGAGATTGCTGATGCTCACGAATTAATGTTGCATGTATTCTGAGTTCTTTCAAGTGTTTGTAACTATTGAAACTAGCTGGGAAGGCAGTGCTCTGGTTAGCTCATTTTTGTTCATAGTCTGCATTGNGGGTGCTGTGGTTTCCTAATCTGTTTTGTAACAACATCGTTGCCATATGTGGCTTCCACATCAAACATACTAAATACATTGGCTTATGCTCTTGTATTTGTATCGGTTCTTTCGTGATTTGTTTCTTGTGAACATGGACATAATTCTGACTATAAATGAAAATATTGGCTGAGATTTTTTTNCCCCCTCATTATGTCAAAAAGAACNGTGGAAACTGTTTTGGATTAGGATACAAAATAGATTATATAAATTCAATTTGAAAGGCTTACTAAAAAGAACTATGACCCGAATTTAACTTGGTTCTTGAATGCAGTTCCCTGTATGTTGTGTTTCACTCTCAGTAGTACAGTATGTAAGGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	713241	716944	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000497.1	PF07714.12	Pkinase_Tyr	72	350	2.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.567
SRR1783600	control	9.506
SRR1783602	moderate drought stress	14.521
SRR1811619	moderate drought stress	14.311

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.587
DRR006520	Root Summer glycyrrhizin high producing strain	15.553
DRR006521	Root Winter glycyrrhizin high producing strain	8.471
DRR006522	Root Winter glycyrrhizin high producing strain	8.338
DRR006523	Root Summer glycyrrhizin low producing strain	34.976
DRR006524	Root Summer glycyrrhizin low producing strain	35.688
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.536
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.579
SRR2868004	Drought Stress (root)	23.254
SRR2967015	Control (root)	30.355

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.347
SRR9715740	Leaf	31.318
SRR9715741	Leaf	35.030
SRR9715739	Root	29.529
SRR9715742	Root	35.830
SRR9715743	Root	33.960

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.278
SRR8749028	MeJA induced 9h	0.510
SRR8749029	MeJA induced 9h	0.344
SRR8749030	Uninduced	1.121
SRR8749031	Uninduced	0.194
SRR8749032	Uninduced	0.831

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.322
SRR8400027	Control - Root	29.783