Gene detail information of Glyur000004s00000492 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39700.1 | 4.00E-126 | expansin A4 |
| NR | XP_003537990.1 | 3.66E-176 | PREDICTED: expansin-A4-like [Glycine max] |
| Swissprot | tr|O48818|EXPA4_ARATH | 2.00E-159 | Expansin-A4 (Precursor) |
| trEMBL | tr|I1LK20|I1LK20_SOYBN | 1.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 689806 | 691420 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000492.1 | PF03330.13 | DPBB_1 | 68 | 155 | 7.50E-25 |
| Glyur000004s00000492.1 | PF01357.16 | Pollen_allerg_1 | 166 | 243 | 1.50E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 99.264 |
| SRR1783600 | control | 101.125 |
| SRR1783602 | moderate drought stress | 59.406 |
| SRR1811619 | moderate drought stress | 58.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 176.454 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 174.197 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.159 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.155 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.622 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.697 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.337 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 92.147 |
| SRR2868004 | Drought Stress (root) | 73.258 |
| SRR2967015 | Control (root) | 87.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.231 |
| SRR9715740 | Leaf | 5.810 |
| SRR9715741 | Leaf | 10.415 |
| SRR9715739 | Root | 42.842 |
| SRR9715742 | Root | 19.996 |
| SRR9715743 | Root | 25.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.440 |
| SRR8749028 | MeJA induced 9h | 0.793 |
| SRR8749029 | MeJA induced 9h | 0.567 |
| SRR8749030 | Uninduced | 0.453 |
| SRR8749031 | Uninduced | 0.003 |
| SRR8749032 | Uninduced | 0.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 146.284 |
| SRR8400027 | Control - Root | 214.333 |