Gene detail information of Glyur000004s00000491 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29050.1 | 4.00E-118 | RHOMBOID-like 1 |
| NR | XP_004486998.1 | 0 | PREDICTED: protein rhomboid-like [Cicer arietinum] |
| COG | YP_002335161.1 | 3.00E-20 | integral membrane protein, Rhomboid family [Thermosipho africanus TCF52B] |
| Swissprot | tr|Q8LB17|Y3846_ARATH | 1.00E-06 | Uncharacterized protein At3g58460 |
| trEMBL | tr|K7M3E7|K7M3E7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G41170.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 673023 | 676404 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000491.1 | PF01694.17 | Rhomboid | 133 | 276 | 1.20E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.025 |
| SRR1783600 | control | 4.195 |
| SRR1783602 | moderate drought stress | 3.098 |
| SRR1811619 | moderate drought stress | 3.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.184 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.354 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.036 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.917 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.169 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.150 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.279 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.512 |
| SRR2868004 | Drought Stress (root) | 11.751 |
| SRR2967015 | Control (root) | 13.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.088 |
| SRR9715740 | Leaf | 4.577 |
| SRR9715741 | Leaf | 3.961 |
| SRR9715739 | Root | 3.665 |
| SRR9715742 | Root | 4.237 |
| SRR9715743 | Root | 2.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.702 |
| SRR8749028 | MeJA induced 9h | 3.337 |
| SRR8749029 | MeJA induced 9h | 2.577 |
| SRR8749030 | Uninduced | 7.104 |
| SRR8749031 | Uninduced | 6.562 |
| SRR8749032 | Uninduced | 5.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.685 |
| SRR8400027 | Control - Root | 22.905 |