Gene detail

Gene detail information of Glyur000004s00000484.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07530.1	5.00E-177	SCARECROW-like 14
NR	XP_004486993.1	0	PREDICTED: uncharacterized protein LOC101504630 [Cicer arietinum]
Swissprot	tr\|Q9XE58\|SCL14_ARATH	0	Scarecrow-like protein 14
trEMBL	tr\|G7IRV1\|G7IRV1_MEDTR	0	GRAS family transcription factor {ECO:0000313\|EMBL:AES67624.1}

Sequence

Transcript Sequence

>Glyur000004s00000484.1
ATGGATCCAAACTTTGTTGGAATTGGAAGCAGCTACAAATTCGACGACGAAGGTAACATAGTGCCTGTCTTTGATCCAAACGATTACCGCAACTTCCTCAATTTCACCACCACTGGTCCTTCNTCTTTCTATCAACCCGATGTGGGACCTCTCGGTTTTGCACCGAACTCGGACCCGGTTGTTTCCTCCTCCTCNTCGAACGCCGCCGCCGCCATGTCCACGGTGGCGGATCCTTCCCTCGAAGACACAGATTTCTCAGAAACCGTCAAGTACATAAGCCAGATTCTGATGGAAGAGGACTTTGACCAGAAACCTTGTATGTGGTATGACCCACTGTGCCTGCAACACACCGAGAAATCCTTCTCCGATGCCTTGGAAGCAAAATTGCCTCTTTCCCCTAACCAACACCCTCTTGATTTTCTGGAGATCCCAGATGGGAATTGTTCCGCANCTGATTCTGGAAACAGCTCAAGTTCTAACGAGTTGAAGCCACCTTCCCCTGAAACCCCTGTTTCTGGTAACTCTGCTTTCAACAATTCCATTTCCCTCGAGCAGCCTCAGCTTGTTGTTCCTCACCATGGTTTGTCTAGTGTCGGTGATGGAGTCTTGGATTTGGATTCTTCTGCAACCAAGCTTTTGGCTCAGAACATCTTCAGTGATGCAGACACCATGTTGCAGTTCAGAAGAGGGTTAGAGGAAGCAAGCAAGTTTCTCCCTCAAAGACCTCAGCTTTACACTGGTTTTGAGCATGGCATGGTGTCCCAAGAGCCAAAAGGAATGGTAGGAGTCAAGGTGGAGGATGGTGTTGGTGAGATCTCACATGGGTCGTTGATGAAGAGTAGGAAGAATCATGAGCGCCAGAGTAGTGATGATGATGAAGAAGGAAGAAGCAACAAGCAGTCTGCGGTTTGTGTTGAGGAGAGTGAAATATCTGAAATGTTTGATAGGGTTTTGCTCAGTGTTGAGAATGTGCCACTGTGTGCTGAACAAGAGGATGGATCGGTGATGGAGGGAAACACACAGGATGGAGGGAAGAGTACTCGTTCTAAGAAACAAGGGAGGAAGAGGGAAACGGTTGATTTGAGGACCCTTTTGGTTCTTTGTGCACAAGCTGTGTCTGCAAGTGACAACAGGACTGCTAGTGAACTTCTGAAGCAGATTAGACAGCATTCTTCTCACTATGGTGATGCATCACAAAGGATGGCTCATTACTTCGCCAATGCCTTGGAAGCACGCTTGGTTGGTGCTGGCCCTGGAACACATATATTTTACATGAACCCCAAGCAGTTCTCTGCTGCTGATTTCCTCAAAGCTTACCAAGTCTTCATATCTGCTTGCCCTTTCAAGAAGTTAGCACATTTCTTTGCAAACAAAATGATCTTGAAAACAGCTGAGAAGGCGGAAACCCTTCATATTGTTGATTTTGGCATCATGTACGGTTTCCAGTGGCCAATTCTCATCAAGTTCTTGTCAAAAAGAGAAGGTGGACCTCCAAAGCTACGCATCACCGGAATAGATTATCCTCAACCTGGCTTTCGGCCCGCAGAGAGGATCGAGGAAACCGGTCGCCGTCTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAAGGCCATAGCATCGCGGAACTGGGAAACCATTCAAATTGAAGACCTTAACATCAAGAGCAGTGAGGTACTTGCTGTCAACTGTCTGGTAAGGTTTAAGAACTTGCTNGATGAAACAATTGAAGTCAACAGTCCTAGAGATGCAGTTCTGAAGTTGATCAGGAAGATAAATCCGGATATATTTGCTCATTCCATAGTNAATGGATCTTATAATGCCCCTTTCTTTGCCACACGGTTTAGGGAGGCACTTTTCCATTATTCTGCGACATTTGANATGTTTGATACCCTCATATCCCGTGCAAATGAATGGAGGTTGAAGATTGAGAGAGAGTTTNTGGGTAGGGAGATCATGAATGTTGTGGCATGTGAAGGTTTCGAGAGGGTTGAGAGGCCTGAGACATACAAGCAGTGGCAGGTTAGGAATGTAAGGGCTGGTTTTAGGCAGCTCCCACTGGATAAGGAGCTAATGGCCAAATTTAGAGATAAGCTAAGAGAATGGTACCACAGAGATTTTGTCTTTGATGAAGATAACAAATGGATGCTTCAAGGTTGGAAAGGCCGCATTTTGTATGCTTCAGCTTGTTGGTCTCATTTCAGAACTCATGCTGAGTTGAAGATATTCTTGGTTTCTCAGAAACAATCTTGCGACACATCTCTTATATCAAAGTCTAACTTTTTTGAGTCCAATTTTGGTCTTAGCCTTTCCTTCAATATGCTTTCTGCAAACTCCTTTATGCAAGATTTTCATGGTCCTAACTCGGTGAACCCTTTTTTTAATGGGTTTGACTTTGATGATTCGTCTTCTTCCCCTTCATCTGGCACAAGCTCAAGTGGGGAATCCTCAGAAGCGACTAGATATTCCAATAACATCCTCAGATACATAAGTGACATCCTCATGGATGAGGAAGACGACTTGGAGTGCAAACCCTGCATGTTGCAGGAATGTTTAAAGCTCCAGGCTGCTGAGAAATCGTTCCATGACGCGCTTGGCCATAACTACCCTTCATCACCCCATCAAGATCCCGGTTGTTTCCCTGACAAAGGCGCTGANCCAGATGTTTTTTTTGGCCGCACTGCTAGTTTTGAGAGCAACAGCAGCTGCACCACTGATCCCTTATGTGATTTGCCTGAGTGGCTTGACACGGTTGGTGAATTTGACTCTTCTTTCCTACAACCACAAACCCCTCTAGTACTAGAAAACACCTACGATGTGGCTCCTCGTCAGGCTAGTGTTTTTTTAGCTAACAAGCCAGTGATGGTTGAAGAGGGTTCTGCTTCAGTGCCCAGAGATTTTTTTAGTCATCAGGTGGATGGTGATACTAGTGATAAACAAGAGGGAAGAGGTAGCAAGCTTTCAGCTGTCTTTGATGATGATTTAGAGTCACCAGAGATCTTGGATGAGAAAGGCATAATCAATCAACCCCAACTATCATCACAGAATGTTGTTGATTTTTTTGGAAAGGCAGCGCGTTCGCGTTCAAAGAAAGTGTCTACCAACACCGACACATTTTTTTATTTATGGACCTTGCTAACTCAATGTGCACAGGCCGTGGCGAGCTATGACCTTTTTTTTGCAAATGAACTCCTCATGCAGATTAGGCAACACTCTTCACCTTATGGGGATGGACTCCAGCGTTTGGCTCACTACTTCGCCAATGGTCTCGAGACAAGATTGACTGCTTTTTTTTCATCATGTAGGCCGCTAGACGCGGCAACTGCTGCAGATATGTTGAAAGCTTACAAACTATTCGTTATCGCATCTCCTTTGCAGAGACTGACAAATACGTTGACAACCAGTTTTTTTGTTAGTCTAGTGAATAAAGAGAGCAGCAGCGTTCATGTTATTGACTTTGGCATTTGCTATGGTTTCCAGTGGCCCTGCCTCATCCAAAAACTGTCAGCAAGACCCGGTGGTCCTCCAAAGCTTCGAATTACAGGAATCGAGCTTCCTCAGCCAGGATTTCGGCCTGCACAAAGGGCGGAGGAGACGGGGCGGCGTCTAGAAAACTACTGCAAGAAGTTCAATGTCCCATTTGAATACAACTGCCTAGCGCAGAAATGGGAGACTATCCAACTTGAGGATTTCATTTTTTTCAGAACTGAACTAACTTTTGTTAGCTGTTTTTACAGACTGAAGAACCTGCCTGATGAAACTGTGGCAGTGAACTGTCCAAGGGATGCTGTGTTGAAGCTGATCAGCAAGGAGGCACTCTACCACTTCTCATCACTGTTTGATATGTTTGATTTTTTTGTGCCTCGTGAAGACACAGAGAGGGTGATGCTTGAGAAAGGGTTGTTTGGATTTTTTTCCATCAACGTTATAGCATGTGAGGGGGCAGAGAGGGTTGAAAGGCCGGAGACCTACAAGCAGTGGCAGGTCAGGAACCGGCGAGCTGGGTTCAAGCAACTCCGATTGGATTTTTTTTTAGTGAATGCAACCAAATCAATGGTGAAGAGGGAATACCACAAGGATATTGTAGTCGATGTGGATGGCAAGTGGGTTCTGCAGGGATGGAAAGGGCGTATTTTGAAT

Protein Sequence

>Glyur000004s00000484.1
MDPNFVGIGSSYKFDDEGNIVPVFDPNDYRNFLNFTTTGPSSFYQPDVGPLGFAPNSDPVVSSSSSNAAAAMSTVADPSLEDTDFSETVKYISQILMEEDFDQKPCMWYDPLCLQHTEKSFSDALEAKLPLSPNQHPLDFLEIPDGNCSAXDSGNSSSSNELKPPSPETPVSGNSAFNNSISLEQPQLVVPHHGLSSVGDGVLDLDSSATKLLAQNIFSDADTMLQFRRGLEEASKFLPQRPQLYTGFEHGMVSQEPKGMVGVKVEDGVGEISHGSLMKSRKNHERQSSDDDEEGRSNKQSAVCVEESEISEMFDRVLLSVENVPLCAEQEDGSVMEGNTQDGGKSTRSKKQGRKRETVDLRTLLVLCAQAVSASDNRTASELLKQIRQHSSHYGDASQRMAHYFANALEARLVGAGPGTHIFYMNPKQFSAADFLKAYQVFISACPFKKLAHFFANKMILKTAEKAETLHIVDFGIMYGFQWPILIKFLSKREGGPPKLRITGIDYPQPGFRPAERIEETGRRLANYCKRFNVPFEYKAIASRNWETIQIEDLNIKSSEVLAVNCLVRFKNLLDETIEVNSPRDAVLKLIRKINPDIFAHSIVNGSYNAPFFATRFREALFHYSATFXMFDTLISRANEWRLKIEREFXGREIMNVVACEGFERVERPETYKQWQVRNVRAGFRQLPLDKELMAKFRDKLREWYHRDFVFDEDNKWMLQGWKGRILYASACWSHFRTHAELKIFLVSQKQSCDTSLISKSNFFESNFGLSLSFNMLSANSFMQDFHGPNSVNPFFNGFDFDDSSSSPSSGTSSSGESSEATRYSNNILRYISDILMDEEDDLECKPCMLQECLKLQAAEKSFHDALGHNYPSSPHQDPGCFPDKGAXPDVFFGRTASFESNSSCTTDPLCDLPEWLDTVGEFDSSFLQPQTPLVLENTYDVAPRQASVFLANKPVMVEEGSASVPRDFFSHQVDGDTSDKQEGRGSKLSAVFDDDLESPEILDEKGIINQPQLSSQNVVDFFGKAARSRSKKVSTNTDTFFYLWTLLTQCAQAVASYDLFFANELLMQIRQHSSPYGDGLQRLAHYFANGLETRLTAFFSSCRPLDAATAADMLKAYKLFVIASPLQRLTNTLTTSFFVSLVNKESSSVHVIDFGICYGFQWPCLIQKLSARPGGPPKLRITGIELPQPGFRPAQRAEETGRRLENYCKKFNVPFEYNCLAQKWETIQLEDFIFFRTELTFVSCFYRLKNLPDETVAVNCPRDAVLKLISKEALYHFSSLFDMFDFFVPREDTERVMLEKGLFGFFSINVIACEGAERVERPETYKQWQVRNRRAGFKQLRLDFFLVNATKSMVKREYHKDIVVDVDGKWVLQGWKGRILN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	628787	638699	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000484.1	PF03514.9	GRAS	361	733	3.50E-113
Glyur000004s00000484.1	PF03514.9	GRAS	1046	1271	1.50E-57
Glyur000004s00000484.1	PF03514.9	GRAS	1273	1381	8.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.387
SRR1783600	control	12.442
SRR1783602	moderate drought stress	14.290
SRR1811619	moderate drought stress	14.219

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.570
DRR006520	Root Summer glycyrrhizin high producing strain	41.779
DRR006521	Root Winter glycyrrhizin high producing strain	14.439
DRR006522	Root Winter glycyrrhizin high producing strain	13.775
DRR006523	Root Summer glycyrrhizin low producing strain	42.367
DRR006524	Root Summer glycyrrhizin low producing strain	40.569
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.826
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.361
SRR2868004	Drought Stress (root)	43.275
SRR2967015	Control (root)	58.827

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.749
SRR9715740	Leaf	29.140
SRR9715741	Leaf	40.020
SRR9715739	Root	37.035
SRR9715742	Root	82.494
SRR9715743	Root	73.588

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.562
SRR8749028	MeJA induced 9h	72.179
SRR8749029	MeJA induced 9h	32.507
SRR8749030	Uninduced	42.868
SRR8749031	Uninduced	50.467
SRR8749032	Uninduced	23.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.086
SRR8400027	Control - Root	19.968