Gene detail

Gene detail information of Glyur000004s00000476

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55910.1	2.00E-97	zinc transporter 11 precursor
NR	XP_003597387.1	0	Zinc transporter [Medicago truncatula]
Swissprot	tr\|Q94DG6\|ZIP1_ORYSJ	2.00E-137	Zinc transporter 1 (Precursor)
trEMBL	tr\|Q9AWG7\|Q9AWG7_MEDTR	0	Zinc/iron permease {ECO:0000313\|EMBL:ABD33123.1}

Sequence

Transcript Sequence

>Glyur000004s00000476.1
CTAACACCTCTCTTTCTTTCTATCTCTTTCTTCTTATCACATCATTTATCTATCACATCAATCACTTATCTCTCTTCTATTCCTATCTATCTCTAGTGGTCAATTGGGTGTTTGGGTGTCAAAATATCATTTTCCTAAGAATTAATACATAATTAGGAGTAGATATCAAAAATCAATAACAACAGCACACAGACACAGGAGGAGTGGTATAGTATAGTTATAGTACGTGGAATACTGAANACATGGCTTCATCCAAAGCCAAAACCCTAAAGTCAACGTTCCTCGTTCTGTGCCTCTTAGCCTCACTCCTCAACCCAATCAAGGGTCACGGAGGACACGATCACGATTCGGATCACAACGTGGATTTGCGTTCTCGGGGTTTGGTACTCGTGAAGATATGGTGTTTGATAATCATGCTGGTGACCACTTTCGCGGGTGGGGTGTCTCCTTACTTCTACCGTTGGAACGAGACTTTCCTTCTTCTGGGGACTCAGTTCGCTGGTGGGGTTTTCCTTGGAACCTCTCTCATCCATTTCCTGAGCGATTCCAACGAAACCTTTCGAGACCTCACAACAAAGACTTACCCTTTCTCCTTCATGCTGGCATGTGCGGGTTACCTNCTCACCATGTTTGGTGACTGCGTTGTGCTTTTTGTCACCGGGATTAGTAGCCAGAGGGAAGCCAAGGTGGTGGAACTCGAAGGAGGGACAACACCCCAATTACAACAAGAGCAAGAAGCCAGAGAGTTGGCAATAATGGATCACACACACAATGCTACCAACCTTGCATTCATGAAGACCTCGTCTGTGGGAGACACCATTCTTCTCATCCTTGCACTCTGTTTCCATTCCGTTTTTGAAGGCATCGCCGTTGGTGTTTCAGGTACTAAGGCGGAAGCATGGAGGAACTTGTGGACAATATCGTTGCACAAGATATTTGCTGCAATTGCAATGGGGATTGCGTTGCTTAGGATGTTACCAAAGAGACCTTTGGTGACAACGGCAGCATATTCTTTGGCATTTGCTGTGTCAAGCCCCATTGGCGTGGGGATTGGCATCGCCATCAACGCCACGACGGAGGGACGCACCGCCGATTGGATGTATGCTATATCTATGGCTATTGCTTGTGGGGTCTTCGTCTATGTTGCCATCAATCATTTGATCTCCAAAGGTTTCAAACCGCAGAGGAAGAGCCGTTTCGACACTCCATGGTTTAAGTTCCTTGCTGTGCTTTCTGGTGTAGCTGTTATTTCAGTTGTCATGATCTGGGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	592006	593791	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000476.1	PF02535.17	Zip	49	339	7.90E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.119
SRR1783600	control	3.119
SRR1783602	moderate drought stress	3.329
SRR1811619	moderate drought stress	3.349

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.255
DRR006520	Root Summer glycyrrhizin high producing strain	0.203
DRR006521	Root Winter glycyrrhizin high producing strain	0.438
DRR006522	Root Winter glycyrrhizin high producing strain	0.426
DRR006523	Root Summer glycyrrhizin low producing strain	4.016
DRR006524	Root Summer glycyrrhizin low producing strain	3.859
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.939

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	93.919
SRR2868004	Drought Stress (root)	134.047
SRR2967015	Control (root)	87.856

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.274
SRR9715741	Leaf	0.416
SRR9715739	Root	1.422
SRR9715742	Root	2.429
SRR9715743	Root	1.617

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.434
SRR8749028	MeJA induced 9h	96.725
SRR8749029	MeJA induced 9h	36.273
SRR8749030	Uninduced	98.991
SRR8749031	Uninduced	45.072
SRR8749032	Uninduced	30.437

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.482
SRR8400027	Control - Root	42.257