Gene detail

Gene detail information of Glyur000004s00000474.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46620.1	4.00E-62	zinc finger (C3HC4-type RING finger) family protein
NR	XP_004486987.1	0	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum]
Swissprot	tr\|P0CH30\|RING1_GOSHI	7.00E-35	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|Q2HS43\|Q2HS43_MEDTR	1.00E-169	Zinc finger, RING-type; Thioredoxin-related {ECO:0000313\|EMBL:ABD33128.1}

Sequence

Transcript Sequence

>Glyur000004s00000474.1
ATGAACTCGGACACACCACCCTCCACGGCGTCGTTTTGGTGCTACAGCTGCACCCGCTTCGTTCACCTCCTGGACCACCACGACGTCGTTTGCCCGCACTGCCAGAGCGGTTTCGTCGAGGAGATCCACGCCGGCCAGTCCCCTGCGGTGTCNCTCTTCGCCGACGGCCTTCAAGCTTCGAGGAGACACGGCTTCCGCCGGAGACGCCGCAACGCCGGCAGCCGCTCTCCCTTCAACCCCGTAATCGTCCTCCGAGGTCCCGGGGAAGACGGAGTCGCCGGCGATGGCGAGGGGAGCGGCTTCGAGCTCTACTACGACGACGGCGACGGTACTGGNCTCCGGCCGCTCCCGCCGACCATGTCGGAGTTTTTGTTGGGGTCGGGGTTCGATCGGTTGCTGGAGCAGTTCTCTCAGATCGAGATCAACGGGTTTGGGCGGGTTGAGAACCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGGCGACGGTTGAGATTGCGGAGGCGGAGGTGGAGGCGGAGACNCACTGCGCGGTGTGCAAGGAAGCGTTCGAGCTTGGTTCGGAAGCGCGTGAGATGCCCTGCAAGCACCTCTATCACTCCGATTGCATCCTCCCGTGGCTCTCCATGCGGAACTCGTGCCCCGTGTGCCGCCACGAGTTGCCGTCCGATCAGAACACTCCGGAGACCAGAATCGCCGGCCAGATCGACGAGGAAGCGGTGGGGTTGACTATTTGGAGGTTGCCGGGCGGCGGATTCGCNGTCGGGAGATTCTCCGGCGGTCGTAGAGCCGGCGAGAGCCAGTTGCCGGTCGTATACACAGAGATGGACGGTGGCGGTGGCGGCAACAACAACTCGAACGGTGGTTCCAGAAGAATCACCTTGGCGGTGGGTGGCAACAGCAACAGAGTTAGGGAGAGTCGTGGATTTCGCAGAATTTTTCGGAATTTCTTNTCCTTCTTTGGGTCCGCGAATAGAAATCGTAGCCTTTCGCGTTCATGGTTCAGTAGGAGAAGAAGCACGACTTGGGTCTCCGAAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	577001	578041	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000474.1	PF14369.1	zf-RING_3	11	42	3.30E-13
Glyur000004s00000474.1	PF13639.1	zf-RING_2	175	217	3.60E-13
Glyur000004s00000474.1	PF06547.7	DUF1117	239	339	3.80E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.652
SRR1783600	control	13.668
SRR1783602	moderate drought stress	19.740
SRR1811619	moderate drought stress	19.334

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	304.846
DRR006520	Root Summer glycyrrhizin high producing strain	300.283
DRR006521	Root Winter glycyrrhizin high producing strain	33.106
DRR006522	Root Winter glycyrrhizin high producing strain	33.002
DRR006523	Root Summer glycyrrhizin low producing strain	440.147
DRR006524	Root Summer glycyrrhizin low producing strain	439.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.508
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.247

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.701
SRR2868004	Drought Stress (root)	103.888
SRR2967015	Control (root)	311.765

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	171.728
SRR9715740	Leaf	216.283
SRR9715741	Leaf	163.968
SRR9715739	Root	907.050
SRR9715742	Root	480.514
SRR9715743	Root	490.132

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	272.930
SRR8749028	MeJA induced 9h	278.819
SRR8749029	MeJA induced 9h	255.787
SRR8749030	Uninduced	326.068
SRR8749031	Uninduced	286.851
SRR8749032	Uninduced	251.999

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	88.606
SRR8400027	Control - Root	167.678