Gene detail

Gene detail information of Glyur000004s00000463

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29210.1	2.00E-65	splicing factor PWI domain-containing protein
NR	XP_007132039.1	0	hypothetical protein PHAVU_011G061700g [Phaseolus vulgaris]
trEMBL	tr\|V7AGQ0\|V7AGQ0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04033.1}

Sequence

Transcript Sequence

>Glyur000004s00000463.1
CTTTAATAAATAAAAAAAATGTGTGTTATTTTGGTAAATAATAAAAAAAAAGTGTTAATGGGTGAAAAAGCCACGATTGGCTGGATGGCAAGGGTAAAACCGTAACTCAGGCTTGTAGAGAGGNATGTGTATTAGGGCAGTAGGTTGTTGAACTCTCTCCCAGTGCGCTGAGCTCGTGTGATGTGAGCTTGTTGCCTTCATCTCATCTCAAAGCATCGAGAACCAGAATCCAATCATCTCATCTCCAATTGCTGTAGAGAGAACCCAAGTGCTGCTCCCTACAGATTCTCATTCACAATCTCAGCACTACATTTTTCTCTCCCTTCAGAAACCCTTTTCCCCACAAGATGTCGGGTGGTTTCTTCCGAGGTACATCTGCTGATCAAGACACTCGGTTTTCGAACAAGCAAGCGAAGCTTATGAAATCGCAGAAGTTCGCGCCGGAATTGGACCATCTGGTGAACATGACAAAGGTGAACATGGAAGTGATGAAGCCGTGGATTACGAGAAGGGTGACTGAGCTTCTTGGCTTTGAAGATGAAGTGCTTATTAACTTCATACACGGTCTNCTCGATGCAAAGGAAGTGAATGGGAAAGAAGTTCAGATACAAATTACTGGTTTTATGGAAAAGAACACTGGAAAGTTCATGAAAGAGCTTTGGACGCTGCTTCTCAGTGCCCAGAAAAATGCCAGTGGTGTTCCTCAGCAGTTCTTGGATGCAAAAGAAGAAGAAATCCGAAAGAAGAAGGCTGAAAACGATAGGATAACAAGCGAAATTCAGTTGAAAAAAGATAAGGAAGATAGAGAGAACATGCAAGAGAGGTTGAAGAAATTGGACGGTGGATTTGATGTGAAGAACACTGNTACTGCTTCAGGTCCTCCAACCTTGAAGCGGAGTGATTCAGGGGACTACATTCAGGATGGAAAAGAAACTGACAGGAGGAACGGTGTTAGATCAAGGAGCAGGTTTTCTAGGTCTCCACACTCACCTGCAGTTTCAACATCACCTCATCGACGCTCACCTTCAAGGTCATTGAGTAAATCATTTTCAAACTCCCGAAGTTATTCAAGTGGTAGACACAAGTCAAGGAGTATATCGAGGTCACCTGAAGCTCAAGGACGCTCCTTTTCTTCTGAAAGGATTCGCCGTTCACCACGTAGACGGTCTATTTCACCTCCTCGTAGGTATTTGCCAGGGCGATCTCCTCTTCGTAGGGGATTTTCTTATTCAAGGCGAAGATCCAGATCCCGCTCAAATTATAGATCACCATCTCCTGTGCAACGTAGAAAGCATTCTCCATTTCATCGCAATTCACCTTTTCGTCGACGCAGAACACCCTCTCCCATAAGAAGACGTAGATCGCCTTCTCCAGCACGTCGTTATAGATCACCATCACCTGTAAGACGGCGGAGGTCACCATCCCCTTGGAGACGAAGATCTCCAGTCATGCGACGTAGGTCACCTTCACCTATTCGCCGAGTCCCTCGAATACCGGTACGACGTAGATCACGCACCCCCTCGGAATCCCCTTCTCCCATACCGCGAAGGTATGGGAGTAGAACTCAACGACAAAGGTCTCTATCTCCTTCACAGCGCAGATCACCTGTTCCTCCANGTAGGTCTCCTTCACCAGATGAATGGAGTTCTCAATCTCCAGTAAGGCATGCATCTCCATCTCCATCTCCAGTTAGGAGAAATTCTCAAATACGCCAAAGAACTCCTGTACAGTCTTCTAGGGGGAGAGTCAGTCCACACGAGAGTCCTCGGAAGCAAAAAGGAGAGAAGTTGACCAATGAAAGAAGCTTGAGTCCACCCGAGAAACCAGGATCCCAAAAACGTANCATAGAGACAAGTGAAGGAGCAGAAGAAACATACTANTCTAGAGAGAGCAGGGATCCTAAATCAAAGTCNTCACAAAAGAAATCAAAATATTCATCCCCTGTTAGAGGGAGAAGTGATTCAGTTGCGAGGTTTACTCATGAAGAAGAATTCTCTTCTCAAAGGGCAGTCGGTCATCCAGCTTCTGAATGTCGTGATTATGGTGATAACATTGATAGGAGNAAGAATGGTCAGGAGATAAAAAGTTATAAATCTTCTAGGAAGGAGGATGAAACTTCAGCTCAAGAGAAGTCACCAGTGAATAAAGAATCCTTTTCCTATAAGAAGGCTCATGAATCATGTGCTGTCGATATTAAAAAACCTGATGACAAGGATCATTCCCATTCAAACCATGACAAGGATAGTAANCGGCACCTCAAATCAGACACAACTCAAAGTTTAGTTGGAAAAGTTNATCGGGTCAATCACAGTGCTTCTAATGATTCTAGTTCTGAGGAAAGTGCCAAATATAGAAGAGAAGGAAAGGATAAGAGAAAGCATAGAAGATCTGATAGGAAACATGTNACTTCGGATGAAGAATATAGTCATGATTCTGAGTTAGAGTATAGGAAAGAAGCTAAGAGGAGGAAAAAGGAGGAGAGGAAGTTAAGGAAGGAGGAGAAGCGTCAAAGACGTGAAGAAAGAAGACGCAGAAGGGAAGAACGACATGCTGAGAAGCTGAAAATGAAGAGCAAAACGGAAGATTATATTTCGGATGTCAAGGAAGCTGAAAGAAGTGATTCTCATCGAAGTGATAATGAAGATACACTGTCTGAGCAAAGGAAGCTTGAGATCGAGTTGCGGAATAAGGCTCTGGAATCCCTTAAAGCAAAGAGGAGCATGAATCACTAACTATGGTGGGTGTATTTTGGGGTCTATATAACATTTTGCCTAACGGGCAATGATTAGTGGACCACCACACACCCCTACAACACCCAAAAACAATGAAGAAAATGGAAATTAGAAGTGTGTGGTGGGTGTATTTTGGGGTCTATATAACATTTTGCCTAACTATGACACCTTTCAGTTTTTTTTTTTAATCTTTCAAACATTGTTGACAAATATCTCTTCAACTTGGCTTTTCAAAGTGTCTGTTTTTATTCATTAGTAAAATGTTTGATGTGGTTTTATCTTTACTGCTGGCAGTGGAAATAGATAAATGACGATTTCTGAGCAAAATCTGTTGAGTGCAACTTTANGCAGATATTGCCCCTATATTTACGGAAATGGGGAGTTCCCCTTCTTTTGGGTGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	514608	520023	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006397 mRNA processing

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000463.1	PF01480.12	PWI	45	116	3.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.530
SRR1783600	control	30.697
SRR1783602	moderate drought stress	62.074
SRR1811619	moderate drought stress	61.971

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.862
DRR006520	Root Summer glycyrrhizin high producing strain	26.231
DRR006521	Root Winter glycyrrhizin high producing strain	47.935
DRR006522	Root Winter glycyrrhizin high producing strain	46.752
DRR006523	Root Summer glycyrrhizin low producing strain	20.829
DRR006524	Root Summer glycyrrhizin low producing strain	20.679
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.832

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.346
SRR2868004	Drought Stress (root)	37.512
SRR2967015	Control (root)	41.681

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.356
SRR9715740	Leaf	18.451
SRR9715741	Leaf	16.420
SRR9715739	Root	1.238
SRR9715742	Root	16.682
SRR9715743	Root	13.399

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.694
SRR8749028	MeJA induced 9h	41.021
SRR8749029	MeJA induced 9h	20.398
SRR8749030	Uninduced	23.042
SRR8749031	Uninduced	6.583
SRR8749032	Uninduced	8.230

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.618
SRR8400027	Control - Root	35.998