Gene detail information of Glyur000004s00000455 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29530.2 | 2.00E-33 | Tim10/DDP family zinc finger protein |
| NR | KHN33351.1 | 4.79E-53 | Mitochondrial import inner membrane translocase subunit Tim10 [Glycine soja] |
| Swissprot | tr|Q9ZW33|TIM10_ARATH | 8.00E-43 | Mitochondrial import inner membrane translocase subunit TIM10 |
| trEMBL | tr|C6T199|C6T199_SOYBN | 4.00E-53 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G47850.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 480994 | 482844 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000455.1 | PF02953.10 | zf-Tim10_DDP | 17 | 78 | 8.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.964 |
| SRR1783600 | control | 11.581 |
| SRR1783602 | moderate drought stress | 8.961 |
| SRR1811619 | moderate drought stress | 8.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.102 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.128 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.211 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.032 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.938 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.939 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.580 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.775 |
| SRR2868004 | Drought Stress (root) | 38.131 |
| SRR2967015 | Control (root) | 33.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.407 |
| SRR9715740 | Leaf | 30.600 |
| SRR9715741 | Leaf | 22.419 |
| SRR9715739 | Root | 30.354 |
| SRR9715742 | Root | 24.852 |
| SRR9715743 | Root | 22.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.137 |
| SRR8749028 | MeJA induced 9h | 21.772 |
| SRR8749029 | MeJA induced 9h | 23.594 |
| SRR8749030 | Uninduced | 12.357 |
| SRR8749031 | Uninduced | 7.958 |
| SRR8749032 | Uninduced | 7.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.501 |
| SRR8400027 | Control - Root | 43.817 |