Gene detail

Gene detail information of Glyur000004s00000442.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57670.1	9.00E-100	C2H2-type zinc finger family protein
NR	ACU19877.1	1.04E-173	unknown [Glycine max]
Swissprot	tr\|Q8W031\|ZWIP5_ARATH	6.00E-127	Zinc finger protein WIP5
trEMBL	tr\|C6TDH5\|C6TDH5_SOYBN	4.00E-174	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19877.1}

Sequence

Transcript Sequence

>Glyur000004s00000442.1
TTGGGTTTGCTTTACCAACATTGGTTTTCTACACGTCTTTTAACCTCTTCATCCTGACTCTTTCATTATGGTAATTCTTTATTTATTTTTTTGTTAAAATTAATCTCAAACTTATCTCTCTCTCTCTCTCCCTTTCCTTGTATGCTGTAGTCTTTCATATCTATAATAACCTAATCCCTTTCCCACGACCATATCATATCATCCCTTAATTTCCTTTCCCACCCTCTCATCATGACCGATCCCTACTGCTCCAATGACTTCAATAATGGTTGCTTGTTTGACCTCAATTCTCCATACCTTTTCTCTTCTTCATCCCCTTGCTCCTCCAATAACCCTCCACCACCATTCTATTTTCATCATCATAACTTCACAGCAAGTGGCATCTCTAGTAGTTATCAATCTTCTCCTCCAAGAGAAGCACTTCCTCTCCTTAATAACCTAAGCCCTGCTACAAGACATACTGGTGAAGATCTAGAATCTTCCTTCAGTGCCATGGAAGTAGTGAAGAATATAAGCAGCAGCAACAGCATATCATCAAGCTCTTTGGATAATAATATTGAAGATGATAGTACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAATCCAACCATAACTTATAATTCAGCTGCTGATTTATTAGCAGCTTCAGCTTCTTCAAACATAGAGGTCTCACTCTCATCAGACAGAGAAATAGGAAAAGTCACAGTTGCTAGTGCTAATACTTGTGATGAGTACACATCAATTACTAGTAGATCAATCAACAGGGGACAATATTGGATCCCTACCCCTGCTCAGATTCTGATTGGTCCAACTCAGTTCTCATGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCACTAAGGGGAACTCAACCAACAGCAATGCTAAGACTCCCTTGCTATTGTTGTGCACCTGGATGCAAGAACAACATTGACCACCCAAGAGNAAAGCCTCTCAAGGATTTCAGAACCCTTCAGACCCATTACAAGAGGAAGCATGGGATCAAGCCTTTCATGTGTAGGAAGTGTTGCAAGGCATTTGCAGTGAGGGGTGATTGGAGGACTCACGAGAAGAACTGTGGGAAGCTTTGGTATTGTTCTTGTGGGTCCGATTTCAAGCACAAAAGGTCCCTTAAGGATCATATCAAGGCATTTGGAAACGGACATAAAGCCTATGGAATCAATGACTGTCTTGATCAAGATGATGAGGCTGGCTCTGAAATTGAGCAAGAAAATGAATATTTCCAGTCATAGTTGATGTGTTTTCAACTATAAAGACAAGACAATTGAGGATTCTCATGTTTTTCAACTAATTACATTGTTGACTTAAGACCACAATCACTCCCTAGCTAGCTCCCCTAGATTTAATTTTTCTCCTATATTGATTTCGTTATGTGTCTTAATTGGTATTTGCATATATGCTCAGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	388326	391342	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000442.1	PF13894.1	zf-C2H2_4	197	216	0.0011

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	91.699
SRR1783600	control	91.915
SRR1783602	moderate drought stress	64.352
SRR1811619	moderate drought stress	64.526

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	64.146
DRR006520	Root Summer glycyrrhizin high producing strain	63.417
DRR006521	Root Winter glycyrrhizin high producing strain	21.338
DRR006522	Root Winter glycyrrhizin high producing strain	20.926
DRR006523	Root Summer glycyrrhizin low producing strain	77.519
DRR006524	Root Summer glycyrrhizin low producing strain	77.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.683
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.684

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.581
SRR2868004	Drought Stress (root)	16.597
SRR2967015	Control (root)	21.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.179
SRR9715740	Leaf	0.510
SRR9715741	Leaf	0.392
SRR9715739	Root	22.631
SRR9715742	Root	27.694
SRR9715743	Root	24.989

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.573
SRR8749028	MeJA induced 9h	37.248
SRR8749029	MeJA induced 9h	13.183
SRR8749030	Uninduced	19.992
SRR8749031	Uninduced	11.480
SRR8749032	Uninduced	6.958

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.960
SRR8400027	Control - Root	41.572