Gene detail

Gene detail information of Glyur000004s00000439

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20870.1	1.00E-102	ZIP metal ion transporter family
NR	XP_004486953.1	2.99E-179	PREDICTED: zinc transporter ZTP29-like [Cicer arietinum]
COG	YP_001972976.1	5.00E-44	zinc transporter ZupT [Stenotrophomonas maltophilia K279a]
Swissprot	tr\|Q940Q3\|ZTP29_ARATH	1.00E-160	Zinc transporter ZTP29
trEMBL	tr\|I1M515\|I1M515_SOYBN	4.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G41580.6}

Sequence

Transcript Sequence

>Glyur000004s00000439.1
GGAGTCCAGTGGCANTAGGTGTGTTTGGCATGCTATCAACCGCTTCTGGTTGTGGAAATTGAAATCAGAAGAATTGTTTGTGATTTGCGTCTAGGTCACCCAATCCAATCGAAGACAACCCTAACCCAACANCGTTGAGGTTGAGGTTGAAGCATGGATTCTCATGTGACGGTAGCTCTTGCTCTTTCACTTGTTGGTGGCCTCAGCACTTCCGTCGGTGCACTTTTTGTAATTATCAATCAAGCTCCCAATTTGAAGATGCTTGGGCTATTACAGGGTTTTGCTGCTGGTTTGATGTTGAGCATATCATTCTTTGATCTCGCTCATAATGCTTTGAACTCACTGGGCTTCTTGAAAGGCAACCTTTGGTTTTTTGCTGGTGTTATATTCTTTGCTGTTGTTGCCAATTTTATCCCAGAGCCAACACTTACTCTCACTTCAGATGTGAAGAATAAAAAGAAAAATGGGGACGAAGGAGGCAAGGATATTATGAAAAAGCATCGTCGACAAGTTTTATTCAGTGGAATTATTACAGCCGTAGGTATAAGCTTACACAATTTTCCTGAAGGAATGGCAGTGTTCCTTGGATCCATGAAGGGCCTCCGTGTTGGCCTCAACTTAGCATTGGCCATTGCTCTGCATAATATCCCAGAGGGCGTTGCTGTTGCACTTCCTATTTATTTTGCGACACAAAGTGATGGTAGTGAATGTGATGGTGGCAACAGAGACGATGGCTTGGTTGAAAAAGATATTAACATGCAAAAGAAAAGAAACTTGAGCCTTAAATGGCAGGCATTCAAATTGGCATCACTTTCTGGCTTTGCTGAACCTCTGGGTGTTATTATTGTAGCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTAGAAGGTTTACTTGGATCAGTTGGTGGAGTTATGGCTTTTCTGACCCTTCATGAAATGCTGCCACTAGCTTTTGATTATGCGGGACAGAAGCAATCTGTCAAGGCTGTCTTTTTTGGAATGGCTTTCATGTCTGCGAGCCTGTATTTTCTAAGTATCAGCTTACCAGAGGAGATAAGCTTGTAGATGGGAACAACCCCTTTTCTTTCCTCAATTCATGAATTCCACAGTATCATTGTGGTGTGTCTTCTGATTCTACCACCAGTTGCAGTAAAATTCCTTCAGAAGGAGTCTCACAAACTTTCCGATGACAATATTATACAGGCATCTGTTGAGGATAGCATTCAGACATCAACATAAAGGGATACATTCCACCTATGATTGTGGTTTNCCCCGACGAATGTACAAAGTAAATTAGAGTAGAGAATAAGAGTATGCTGTCTTTAATTCTTAAACCGGTCACCGATCTTGTATCTTGTATCATCAAATGAAGGTCAGTCTTTGAATTGCACAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	375538	380318	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000439.1	PF02535.17	Zip	110	178	1.10E-10
Glyur000004s00000439.2	PF02535.17	Zip	109	261	1.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.494
SRR1783600	control	16.746
SRR1783602	moderate drought stress	20.662
SRR1811619	moderate drought stress	20.357

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.760
DRR006520	Root Summer glycyrrhizin high producing strain	19.931
DRR006521	Root Winter glycyrrhizin high producing strain	25.669
DRR006522	Root Winter glycyrrhizin high producing strain	24.896
DRR006523	Root Summer glycyrrhizin low producing strain	16.630
DRR006524	Root Summer glycyrrhizin low producing strain	15.664
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.548
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.834

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.697
SRR2868004	Drought Stress (root)	58.646
SRR2967015	Control (root)	46.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.687
SRR9715740	Leaf	31.401
SRR9715741	Leaf	23.145
SRR9715739	Root	12.472
SRR9715742	Root	15.858
SRR9715743	Root	16.926

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.549
SRR8749028	MeJA induced 9h	18.415
SRR8749029	MeJA induced 9h	10.500
SRR8749030	Uninduced	11.973
SRR8749031	Uninduced	7.342
SRR8749032	Uninduced	7.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.860
SRR8400027	Control - Root	44.419