Gene detail

Gene detail information of Glyur000004s00000432

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20820.1	3.00E-154	Leucine-rich repeat (LRR) family protein
NR	XP_004486948.1	0	PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Cicer arietinum]
COG	YP_004775215.1	4.00E-36	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q00874\|DR100_ARATH	1.00E-147	DNA-damage-repair/toleration protein DRT100 (Precursor)
trEMBL	tr\|C6ZS03\|C6ZS03_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G41650.1}

Sequence

Transcript Sequence

>Glyur000004s00000432.1
ATGGGTGGCGTTGGGTTTTTGCAAGTATCAGTACTATTACTGGCGCTGAGCGCTGGCGTCCGATCGTGTCCGCCGTCGGACAGGGCGGCACTACTGGCCTTCAAGGCGGCGCTCCACGACCCTTACCTCGGCATCTTCAACTCGTGGACCGGCGCCGACTGCTGCAACAAATGGTACGGCGTCAGCTGCGACAGGGAGACCCGGCGCGTCGCCGACATCAACCTCCGCGGCGAGTCGGAGGACCCAATCTTCGAGCGGGCCCACCGCACCGGCTACATGACCGGATACATCTCGCCGGCGATCTGCAGGCTCGCACGTCTCTCCAGCTTCACCGTCGCCGACTGGAAGGGAATCTCCGGAGAGATCCCCCGCTGCATCACCTCCCTTCCGTTCCTCCGAATCGTCGACCTCATCGGAAACCGCATCTCCGGCACCATCCCCTCCGACATCGGGAGGCTCCACCGCCTCACCGTCTTCAACGTCGCCGACAACGCAATCTCCGGGAGAATCCCGCCGTCGCTTACGAACCTCACGAGCCTCATGCACCTCGACCTACGCAACAACCGGGTCTCCGGCCCCATCCCGCGTGACATTGGCAGGCTTCCAATGCTGAGCCGGGCCTTACTTAGCGGGAACCAAATAAGTGGGCCCATCCCGGGCTCANTCTCTCGCATTTACCGTCTCGCAGATCTGGATCTATCTCGCAACCAGGTATCTGGGCCCATCCCAGAATNGCTGGGTAAAATGGCGGTCCTTTCGACGCTTAATTTGGATATGAACAGGCTTTCTGGGCCCATTCCTGCGGCCCTTTTCAGTTCGGGAATAAGTGACTTGAACTTGAGCCGTAACAGCTTGGAGGGTAATATACCTGACGCGTTTGGTGTGAGGTCGTATTTCACGGTGCTGGATTTGTCGTATAACAATCTGAAAGGGCCGGTTCCGAAATCCATGGCCGCTGCTTCTTATATTGGACACTTGGATTTGAGTCACAACCATTTGTGTGGCCCAATTCCCGTTGGGTCGCCGTTTGATCATCTGGAGGCGTCGTCTTTTGTCTACAACGATTGCCTCTGCGGGAAACCACTCAAAGCTTGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	333834	334931	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000432.1	PF08263.7	LRRNT_2	25	64	2.60E-12
Glyur000004s00000432.1	PF13855.1	LRR_8	132	189	8.30E-07
Glyur000004s00000432.1	PF00560.28	LRR_1	325	343	0.38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.089
SRR1783600	control	3.167
SRR1783602	moderate drought stress	1.645
SRR1811619	moderate drought stress	1.578

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.866
DRR006520	Root Summer glycyrrhizin high producing strain	1.691
DRR006521	Root Winter glycyrrhizin high producing strain	1.011
DRR006522	Root Winter glycyrrhizin high producing strain	0.841
DRR006523	Root Summer glycyrrhizin low producing strain	3.247
DRR006524	Root Summer glycyrrhizin low producing strain	3.262
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.108
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.968

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.759
SRR2868004	Drought Stress (root)	19.380
SRR2967015	Control (root)	19.665

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.228
SRR9715740	Leaf	1.336
SRR9715741	Leaf	2.887
SRR9715739	Root	7.715
SRR9715742	Root	2.765
SRR9715743	Root	4.645

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	76.567
SRR8749028	MeJA induced 9h	133.603
SRR8749029	MeJA induced 9h	72.863
SRR8749030	Uninduced	13.521
SRR8749031	Uninduced	5.222
SRR8749032	Uninduced	12.478

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.356
SRR8400027	Control - Root	3.573