Gene detail information of Glyur000004s00000430.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76320.1 | 3.00E-123 | FAR1-related sequence 4 |
| NR | XP_006595046.1 | 0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1 [Glycine max] |
| Swissprot | tr|Q6NQJ7|FRS4_ARATH | 1.00E-144 | Protein FAR1-RELATED SEQUENCE 4 |
| trEMBL | tr|I1M527|I1M527_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G41660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 325657 | 328936 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000430.1 | PF03101.10 | FAR1 | 29 | 114 | 4.70E-24 |
| Glyur000004s00000430.1 | PF04434.12 | SWIM | 332 | 360 | 7.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.180 |
| SRR1783600 | control | 6.258 |
| SRR1783602 | moderate drought stress | 7.109 |
| SRR1811619 | moderate drought stress | 7.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.817 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.625 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.576 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.991 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.392 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.115 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.836 |
| SRR2868004 | Drought Stress (root) | 14.887 |
| SRR2967015 | Control (root) | 14.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.244 |
| SRR9715740 | Leaf | 8.117 |
| SRR9715741 | Leaf | 8.570 |
| SRR9715739 | Root | 1.743 |
| SRR9715742 | Root | 6.482 |
| SRR9715743 | Root | 6.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.429 |
| SRR8749028 | MeJA induced 9h | 5.495 |
| SRR8749029 | MeJA induced 9h | 4.153 |
| SRR8749030 | Uninduced | 4.237 |
| SRR8749031 | Uninduced | 3.403 |
| SRR8749032 | Uninduced | 2.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.882 |
| SRR8400027 | Control - Root | 11.575 |