Gene detail information of Glyur000004s00000424 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10390.1 | 9.00E-74 | Histone superfamily protein |
| NR | XP_006301260.1 | 2.64E-92 | hypothetical protein CARUB_v10021660mg, partial [Capsella rubella] |
| Swissprot | tr|P68428|H32_WHEAT | 2.00E-94 | Histone H3.2 |
| trEMBL | tr|W5A3T1|W5A3T1_WHEAT | 7.00E-93 | Histone H3 {ECO:0000256|RuleBase:RU004471} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 295864 | 296274 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000424.1 | PF00125.19 | Histone | 58 | 132 | 2.30E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.392 |
| SRR1783600 | control | 12.488 |
| SRR1783602 | moderate drought stress | 6.930 |
| SRR1811619 | moderate drought stress | 6.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.390 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.372 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.516 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 70.157 |
| SRR2868004 | Drought Stress (root) | 31.936 |
| SRR2967015 | Control (root) | 27.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.368 |
| SRR9715740 | Leaf | 0.119 |
| SRR9715741 | Leaf | 4.480 |
| SRR9715739 | Root | 16.985 |
| SRR9715742 | Root | 4.188 |
| SRR9715743 | Root | 5.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 76.122 |
| SRR8749028 | MeJA induced 9h | 50.207 |
| SRR8749029 | MeJA induced 9h | 33.786 |
| SRR8749030 | Uninduced | 4.152 |
| SRR8749031 | Uninduced | 0.541 |
| SRR8749032 | Uninduced | 1.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.700 |
| SRR8400027 | Control - Root | 31.766 |