Gene detail

Gene detail information of Glyur000004s00000407

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20790.1	3.00E-115	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004486934.1	0	PREDICTED: uncharacterized protein YMR315W-like [Cicer arietinum]
COG	NP_578283.1	3.00E-18	hypothetical protein PF0554 [Pyrococcus furiosus DSM 3638]
trEMBL	tr\|I3T1A8\|I3T1A8_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK46300.1}

Sequence

Transcript Sequence

>Glyur000004s00000407.1
TAAGAATATGCTGATTTGGCAGGTCTTCTTTACCTTAGAAGGTGGAAAGGAAATTAATNGACGTGTCAGTCACGGAGCTCACTCTCTCCAGTCTCCAGTGAGTGTGCCATTCCCATCATCAACAACGAGTTGATTTAGAATCAAAGCAAGCGAGAAGAAATATTGAGAAAGAGAAACAAGGTGAGATTTGATTTGTAGGTAGTTATGGCGACGAAGCCTCCACGGATCGCCATTCTGGGAGCGGGTACGTTTGTGAAGAATCAGTACCTTCCAAGACTCTCCGAGATCTCTCACCTCTTCCTTCTCAAAGCAATTTGGAGCCGTTCTCAGGAATCGGCTAGAGCTGCTGTAGAAATAGCACATAAACATTTTGCTGGAGTGGAGTGTAAGTGGGGAGATAACGGTCTTGATGACATCATCCAAGATCCATCCATCGACGCCGTTGCTGTGGTTTTGGCTGGACAAAATCAGGTTGACATCTCGTTGAGGATGCTAAAGGCTGGTAAACATGTCCTTCAAGGTACAAGTGAGCTGGAAACTGCATTATCAAACTACGAATCAATTTCTGCTGATGCTCCTGGTCAATTAATTTGGTCAGTGGCTGAAAATTATCGATTTGAGCCTGGCATAGTAGAGTGCAAGAAACTAATTGCTGACATTGGGAAAATGATGAGTGTCCAAGTCATTATCGAAGGATCAATGAACAGTTCAAACCCTTACTTTTCAAGCTCTTGGAGGCGCAATTTCACTGGAGGATTCATTCTTGATATGGGCGTGCATTTCATTGCAGGGTTAAGAATGCTTGTTGGGTGTGAGGTGGTTTCAGTGTCAGCTATGACATCTCATGTGGATTTGACCTTACCACCGCCTGATAATTTATCATCTGTCTTAATGGATGTTCAGGAGTATTTGTCATGGTTGTCTCCTCCAGATCACCCAAGGCATGTGATCTTATGGCGAGTTGTTGGCACAAATGGAACCCTGCAAGTCGAGCGCGGATTCCAAGGACAACATGGTTACCTGGTTACATTATATGATGCTAATGGAGAAAGTAAAAGCTCCTTTTTCCCATTCAGTGGAGTAACTGAAGAATTGAAAGCTTTTATTAATGATGTATCNGAAAACACCCTCAAGAAGGGTAGTCAGTTTGTGGCTGAGCACCGCCTCTCTTTTGTCGAGGGTGCNAGAGATGTTGCTGTTTTAGAGGCAATGCTTGAATCCGGAGCAAGGAAGGGTGAGCTAGTTCANGTGAAAAAGTTTTGAGGTAACGGAACTCTTTGCGTTGACCCCTTAATATCTGTGGATATTTGCCAAGAGTAGATGAATGAGCCGGTGTTTGCAGAATTACTCCGATCAATGTGATTGGATGAAGTTTTAAGATTTGTATACATTCATTGAAATTATTACTGGTATGCTCATGCATCTGAAACTTCTAATATCTTGAGGCGAAGTACTATTCTTTGAAATAATGCGATGTAAGTTAAATTATTATGATATTCTACGCATTTATTAATACATGGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	208058	212869	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000407.1	PF01408.17	GFO_IDH_MocA	7	105	1.10E-09
Glyur000004s00000407.1	PF02894.12	GFO_IDH_MocA_C	147	215	3.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.173
SRR1783600	control	18.183
SRR1783602	moderate drought stress	9.661
SRR1811619	moderate drought stress	9.569

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.181
DRR006520	Root Summer glycyrrhizin high producing strain	17.676
DRR006521	Root Winter glycyrrhizin high producing strain	4.669
DRR006522	Root Winter glycyrrhizin high producing strain	4.795
DRR006523	Root Summer glycyrrhizin low producing strain	10.691
DRR006524	Root Summer glycyrrhizin low producing strain	10.686
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.623
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.427

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.551
SRR2868004	Drought Stress (root)	25.347
SRR2967015	Control (root)	27.567

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.472
SRR9715740	Leaf	7.409
SRR9715741	Leaf	7.500
SRR9715739	Root	7.528
SRR9715742	Root	11.789
SRR9715743	Root	8.581

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.600
SRR8749028	MeJA induced 9h	23.533
SRR8749029	MeJA induced 9h	14.299
SRR8749030	Uninduced	2.624
SRR8749031	Uninduced	0.396
SRR8749032	Uninduced	2.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.076
SRR8400027	Control - Root	32.002