Gene detail

Gene detail information of Glyur000004s00000398.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59380.1	1.00E-116	farnesyltransferase A
NR	XP_003597496.1	0	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Medicago truncatula]
COG	NP_275211.1	3.00E-06	hypothetical protein MTH68, partial [Methanothermobacter thermautotrophicus str. Delta H]
Swissprot	tr\|O24304\|FNTA_PEA	0	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
trEMBL	tr\|G7IHS5\|G7IHS5_MEDTR	0	Protein prenyltransferase alpha subunit repeat protein {ECO:0000313\|EMBL:AES67747.1}

Sequence

Transcript Sequence

>Glyur000004s00000398.1
AAAAAAAAAAGTAGAGTAGAAGGGAAGAAGAAGAAGAAGAATCGAGAAGGATGGCAGGGAGAAGCGAAGGAGAAGAGGAGGAGGAGCGGGTGGCGCTGAGGGAGAGGCCGGAGTGGTCCGATGTTACTCCGATCCCGCAAGACGACGGGCCCAACCCGGTGGTTCCGATCAACTACACCGAAGAGTTTGCGGAAGTTATGAGCTACTTTCGCGCCATTTACCTCTCCAATGAGCACTCCCCTCGCGCTCTTCAACTCACCTCCGAAGCTATCCGCTTAAACTCCGGCAACTACACTGTGTGGCATTTCCGGCGGTTATTACTTGAGTCGCTGGAAGTTGACCTACACGCTGAACTGGAATTTGTGGACACTGTAGCCAGTGGCAATTCCAAAAATTATCAGATTTGGCATCATAGGCGATGGGTTGCTGAGAAATTAGGACCTGAAGCTAGAAACGGTGAACTGGAGTTCACCAAGAAGATACTGTCTGTTGATGCCAAACATTATCATGCATGGTCTCATAGGCAGTGGGTTCTTCAAGCACTAGGAGGATGGGAAGATGAACTCAATTATTGTAGTGAACTGCTTGAAGAAGACATATTTAACAATTCTGCTTGGAATCAGAGATATTTTGTCATAACAAGGTCTCCCTTTTTGGGGGGCCTAGAAGCTATGCGAGAGTCTGAATTGCTTTACACAGTTGAAGCCATTATGGGCTACCCCGAAAATGAAAGCTCATGGAGATATCTTCGAGGACTTTTCAAAGGTGAAACCACATTATATGTAAATGACCCTCGAGTTTCTTCAGTATGTTTAAAGATTTTGAATACTAAGAGCAACTACTTGTTTGCTCTTNGTACTCTTTTGGATCTTATCTGCCTCGGTTATCAACCAAATGAAGATTTCAGAGAGGCCATTGAAGCTTTAAAGACTTCAGATTCTGATAAACAAGATCCAGATATAGCAAGAAATATTTGTTCGATCTTAGAACAAGTTGATCCAATCAGAGCCAACTATTGGATCTGGCGCAAGAGTAGACTTCCTCGGGTAGCTCAGTACCAAAGCAATTAAAGGACAACTTTATGTCATTTGTGTAATTTACACTTCGTCTNTCGAGATTGGATATTTCATGAACCAACAACCTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	143583	146109	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05955	FNTA	EC:2.5.1.58 2.5.1.59	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0018342 protein prenylation

molecular_function
GO:0008318 protein prenyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000398.1	PF01239.17	PPTA	65	94	2.80E-09
Glyur000004s00000398.1	PF01239.17	PPTA	101	130	3.40E-10
Glyur000004s00000398.1	PF01239.17	PPTA	137	166	6.70E-12
Glyur000004s00000398.1	PF01239.17	PPTA	170	197	3.70E-09
Glyur000004s00000398.1	PF01239.17	PPTA	212	237	7.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	71.161
SRR1783600	control	71.840
SRR1783602	moderate drought stress	61.338
SRR1811619	moderate drought stress	61.146

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.951
DRR006520	Root Summer glycyrrhizin high producing strain	40.334
DRR006521	Root Winter glycyrrhizin high producing strain	34.186
DRR006522	Root Winter glycyrrhizin high producing strain	33.066
DRR006523	Root Summer glycyrrhizin low producing strain	54.686
DRR006524	Root Summer glycyrrhizin low producing strain	54.370
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.851

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.867
SRR2868004	Drought Stress (root)	33.169
SRR2967015	Control (root)	35.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.083
SRR9715740	Leaf	18.999
SRR9715741	Leaf	24.691
SRR9715739	Root	18.084
SRR9715742	Root	35.964
SRR9715743	Root	31.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.160
SRR8749028	MeJA induced 9h	29.032
SRR8749029	MeJA induced 9h	17.065
SRR8749030	Uninduced	16.762
SRR8749031	Uninduced	5.175
SRR8749032	Uninduced	14.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.145
SRR8400027	Control - Root	43.591