Gene detail information of Glyur000004s00000397.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G05900.22.00E-68endonuclease III 2
NRXP_004486924.13.22E-105PREDICTED: endonuclease III-like protein 1-like [Cicer arietinum]
COGYP_004151796.18.00E-36DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio ammonificans HB-1]
Swissprottr|B9DFZ0|NTH2_ARATH1.00E-83Endonuclease III homolog 2, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03183} (Precursor)
trEMBLtr|G7IHS6|G7IHS6_MEDTR2.00E-102EndoIII-related endonuclease {ECO:0000313|EMBL:AES67748.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00004140045143150+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K10773NTHEC:4.2.99.18Base excision repairmap03410


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006284  base-excision repair


molecular_function

GO:0003677  DNA binding

GO:0003824  catalytic activity

GO:0051539  4 iron, 4 sulfur cluster binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000004s00000397.1PF00730.20HhH-GPD331382.70E-11
Glyur000004s00000397.1PF00633.18HHH981223.70E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.355
SRR1783600control2.342
SRR1783602moderate drought stress1.939
SRR1811619moderate drought stress1.727

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.229
DRR006520Root Summer glycyrrhizin high producing strain2.138
DRR006521Root Winter glycyrrhizin high producing strain0.537
DRR006522Root Winter glycyrrhizin high producing strain0.531
DRR006523Root Summer glycyrrhizin low producing strain2.384
DRR006524Root Summer glycyrrhizin low producing strain2.311
DRR006525Leaf Summer glycyrrhizin high producing strain6.068
DRR006526Leaf Summer glycyrrhizin high producing strain4.758

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)6.958
SRR2868004Drought Stress (root)7.667
SRR2967015Control (root)6.385

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf6.427
SRR9715740Leaf9.134
SRR9715741Leaf6.259
SRR9715739Root1.036
SRR9715742Root2.534
SRR9715743Root2.044

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.684
SRR8749028MeJA induced 9h3.155
SRR8749029MeJA induced 9h1.535
SRR8749030Uninduced0.776
SRR8749031Uninduced0.276
SRR8749032Uninduced0.302

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root10.661
SRR8400027Control - Root10.524

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved