Gene detail

Gene detail information of Glyur000004s00000390.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07500.1	6.00E-34	Far-red impaired responsive (FAR1) family protein
NR	XP_004486917.1	7.49E-165	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	1.00E-22	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|G7IHU5\|G7IHU5_MEDTR	3.00E-162	FAR-RED impaired response-like protein {ECO:0000313\|EMBL:AES67767.1}

Sequence

Transcript Sequence

>Glyur000004s00000390.1
AAAAAAAGCAAGAAAGAAACCCTTTAAATTGGGAAATCATGTAACTGTAGCAATCTATTTTTCAATTGTTAATGATTACTGTTGTTTCAATGATCAAATTTTCCTTACATTTTCTGATGAACTGTGCAGGATAATCTAATTATTTGTGTAACTCTGCTATAATAGGATGATGGATCACCAATCTGGCCAGGGATTTGATTCAGATGGTAGTGACCTTGATATGCTAGCAGACATCAGTGAGAAACGTGAGAATGTAGAAGATGAGTTTTCAAAAAATTTAGGATTATGTGCAGATGAAGATGAAATGTTTGCAGAACAACTCGTAGGAGATTCAGACACTTTAGAACCATTCATAGGCATGCAATTCAATTCAAGAGAGGAAGCCAGAGAATTCTACATTGCCTTTGGTAGGCGGGTAGGATTTACAGTACGAATACACCATAACCGTCGTTCACGAGTGAATAACCAGGTTATTGGTCAAGATTTCGTCTGCTCAAAAGAAGGCTTTCGTGCAAAAAAGTATGTACACAGAAAAGATAGGGTCCTCCCTCCTCCACCAGCCACCCGAGAAGGTTGTCAGGCCATGATAAGGTTGGCTTTACGGGATGAAGGGAAGTGGGTTGTCACCAAATTTGTTAAGGAACATACGCATAAACTGATGAGTCCTAGTAAAGTTCCATGGCGAGGATCTGGGAAGCACTTGGTTAGTGAGGATGAGAAAGATAAGAGAATCCGTGAGCTATCGCTTGAGTTGTACAATGAAAGGCAGAAGTGCAAACGGCGTTGTGCAGCATATGAACAGCAGTTAAATATGATTCTGAACGATTTGGAAAAGCACACAGAACACATCTCTAAAAAAGTTGCCGATGTAGTCCGAAGTATAAGAGAGATTGAGGAGGAAAAATCAGATTCAGATGGCAGGTTGCCATGATAGCATGTTTCATTGTTGCTANACATCCTGGTTGAGATTGTTGAACCTATTTGGGAGTTGAAGGTTCCAGACATAATTCTATCAAACATTTAGACGTGATTTGGCTTGAAGTTGTGTAGTGGTCACATTAAACTTCAGGCAGTATATAGTTTACCGGGAAATTCATTTTCTGGNGTGTATCATGTTCTGAATTAGGTGCTTAAAGTTCTAACTTTGTATTGTTATAAAGCGATTCCCTTGTGAGTACCATAGACATTTCATTCTTACATTGGACTCAACTTTTTCGAGCCGCACNTTACAGCGGTTATTTACCATTCCAAGTTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	110669	112517	-

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000390.1	PF03101.10	FAR1	75	165	4.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.299
SRR1783600	control	4.179
SRR1783602	moderate drought stress	3.291
SRR1811619	moderate drought stress	3.382

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.360
DRR006520	Root Summer glycyrrhizin high producing strain	10.139
DRR006521	Root Winter glycyrrhizin high producing strain	5.895
DRR006522	Root Winter glycyrrhizin high producing strain	5.552
DRR006523	Root Summer glycyrrhizin low producing strain	13.953
DRR006524	Root Summer glycyrrhizin low producing strain	14.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.363
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.220

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.411
SRR2868004	Drought Stress (root)	9.113
SRR2967015	Control (root)	10.302

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.565
SRR9715740	Leaf	10.411
SRR9715741	Leaf	5.939
SRR9715739	Root	0.953
SRR9715742	Root	3.655
SRR9715743	Root	2.557

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.335
SRR8749028	MeJA induced 9h	5.057
SRR8749029	MeJA induced 9h	3.503
SRR8749030	Uninduced	1.450
SRR8749031	Uninduced	0.311
SRR8749032	Uninduced	0.505

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.248
SRR8400027	Control - Root	9.264