Gene detail

Gene detail information of Glyur000004s00000387.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59470.2	5.00E-77	Far-red impaired responsive (FAR1) family protein
NR	XP_007150433.1	5.20E-150	hypothetical protein PHAVU_005G153200g [Phaseolus vulgaris]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	5.00E-24	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|V7BWP3\|V7BWP3_PHAVU	2.00E-150	Uncharacterized protein {ECO:0000313\|EMBL:ESW22427.1}

Sequence

Transcript Sequence

>Glyur000004s00000387.1
ATGCTCTTTCAAATTTATTGCTACCCTTCCGGAAGTGGGTCATGGGAAATATGGGCTGGACTGGACGGGGAGTCTCCATATGCTTTTCCTTACCTGAACCCCCCTCTCTTTCTGTTCTCAAGTGAATCTCAATCTGCTGCGCTGCACTGCACGGAACACAAAAATTTAATAAAAATTTGCAAAATCACAGACGCTTCCTACGACAATCCAATTTGCGTCACCCTCAATTCTCTTCTCATGGAGTTTGGGATCGATGGCTCCATTAATGGTGAGGCAGTAGGAAATGCTACTATGGGAGAGGTTAATAGTAACATAGCTGACGAAGACAAAAATGGATACAGTTCTTCTGATCCAACTAGTAAACAAGATCAAGATCAAGATGATAATACAACTCAAGATTCTTCTGGAGGGGACAAAATCCCATCAGCAATTCCTGCAGTATCGCTTGTGCCAGGCGATGAACCCTATATGGGTCAGGAGTTTGATTCAGAAGCTCAAGCACATGCATTTTATAATGATTATGCTACACGTGTTGGATTCATCATACGTGTAAGCAAGCTTTCACGGTCAAGGCGTGATGGAACTGCAATTGGACGGGCTCTTGTTTGCAACAAAGAAGGTTACAGGATGCCTGACAAGCGTGAAAAGATTGTGAGGCAAAGGGCTGAAACAAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAAGTAAATTCTGGTAAATGGGTTGTTACAAAGTTTGTAAAGGAGCACACACATCCTCTGACACCTGGAAAAGGCAGAAGGGACTTCGTTTATGAGCAATTTCCGAACGAGCATGACAGAGTTCGAGAACTATCTCAGCAGTTGGCTATAGAGAAAAAGCGATCTTCAACCTATAAAAGGCATCTGGAATTGTTATTTGAGTACATGGATGAGCACAATGAAACCGTTTCGAAGAAAATACAACACATAGTAGAGAGTGTGAAGGAGATGGAAACCAAAGAAGAAGAGAGTTAGTTGTAGATAGGTTCAATTCTNAGTTATCTAGTCTTTTAATTCTTTTTTCACTGGATGAAACACAGAATCAACCGTCAGGATTGAAAGTGCTGCTAGATAAATTGTGCNATAATATAATTGCTGACCTAGGTATCTGCTTTAGTCCATCTTTAGGTATCAGGTGAGTTCTGTAGTTCAGTTTGTTAAGTTGAATGGAATTNAATAATTTATAGTGGATTGCTTTATATGCTGTAGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	88472	91451	+

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000387.1	PF03101.10	FAR1	170	257	2.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.055
SRR1783600	control	8.923
SRR1783602	moderate drought stress	11.626
SRR1811619	moderate drought stress	11.817

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.207
DRR006520	Root Summer glycyrrhizin high producing strain	21.024
DRR006521	Root Winter glycyrrhizin high producing strain	17.328
DRR006522	Root Winter glycyrrhizin high producing strain	16.674
DRR006523	Root Summer glycyrrhizin low producing strain	23.990
DRR006524	Root Summer glycyrrhizin low producing strain	24.069
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.384
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.290
SRR2868004	Drought Stress (root)	24.373
SRR2967015	Control (root)	26.115

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.633
SRR9715740	Leaf	18.760
SRR9715741	Leaf	21.310
SRR9715739	Root	2.099
SRR9715742	Root	6.012
SRR9715743	Root	6.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.217
SRR8749028	MeJA induced 9h	27.921
SRR8749029	MeJA induced 9h	20.232
SRR8749030	Uninduced	31.462
SRR8749031	Uninduced	19.464
SRR8749032	Uninduced	19.179

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.875
SRR8400027	Control - Root	19.680