Gene detail information of Glyur000004s00000371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59540.1 | 8.00E-32 | Ribosomal L38e protein family |
| NR | KDP26900.1 | 1.78E-40 | hypothetical protein JCGZ_18058 [Jatropha curcas] |
| Swissprot | tr|O22860|RL38_ARATH | 5.00E-41 | 60S ribosomal protein L38 |
| trEMBL | tr|A0A067K3R2|A0A067K3R2_JATCU | 7.00E-41 | Uncharacterized protein {ECO:0000313|EMBL:KDP26900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00004 | 8053 | 9300 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000004s00000371.1 | PF01781.13 | Ribosomal_L38e | 2 | 68 | 2.30E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.955 |
| SRR1783600 | control | 6.723 |
| SRR1783602 | moderate drought stress | 8.379 |
| SRR1811619 | moderate drought stress | 8.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.302 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.099 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.878 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.094 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.501 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.530 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 90.244 |
| SRR2868004 | Drought Stress (root) | 53.021 |
| SRR2967015 | Control (root) | 48.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.292 |
| SRR9715740 | Leaf | 30.068 |
| SRR9715741 | Leaf | 12.244 |
| SRR9715739 | Root | 43.391 |
| SRR9715742 | Root | 25.170 |
| SRR9715743 | Root | 29.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.839 |
| SRR8749028 | MeJA induced 9h | 16.315 |
| SRR8749029 | MeJA induced 9h | 19.405 |
| SRR8749030 | Uninduced | 4.849 |
| SRR8749031 | Uninduced | 1.459 |
| SRR8749032 | Uninduced | 3.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.982 |
| SRR8400027 | Control - Root | 37.962 |