Gene detail

Gene detail information of Glyur000004s00000370.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37650.1	1.00E-115	GRAS family transcription factor
NR	XP_004486891.1	0	PREDICTED: protein SHORT-ROOT-like [Cicer arietinum]
Swissprot	tr\|Q9SZF7\|SHR_ARATH	2.00E-145	Protein SHORT-ROOT
trEMBL	tr\|I1M578\|I1M578_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G42100.1}

Sequence

Transcript Sequence

>Glyur000004s00000370.1
ATGCAGGAGATTAGTCTTTACAATACTTCAAAGAAAACACATCAATTGAACCACCACCATCACAACAACCACAACAATATTATTGGTGAGGCAGCAGCAGCAGCAGCAGCATCATCATCCATAGACATGCACCACCACCGTAGCAGCAACACAAACACATCTTCAGACAACTCAAGCGATCACACTCACGATGGTACTAATACTAAGTGGTCGTCAAAGCTTCTAAGGGAGTGTGCAAGAGCAATCTCCGAAAGAGACTCAAACAAAATCCACCACCTCCTATGGATGTTAAACGAGCTAGCTTCCCCTTACGGAGACACNGACCAAAAACTAGCCTCATACTTCTTACAAGCTCTGTTCTGCAAGGCCACAGAGTCAGGACACAAATGCTACAACACCCTCTCCTCTGTATCTGAGAAAAACCACTCCTTCGATTCAGCCAGAAAGTTAATCCTCAAGTTCCAAGAGGTAAGTCCATGGACAACTTTCGGACACGTGGCATCAAATGGTGCCATCTTGGAAGCCTTGGAAGGAGAGACCAAACTCCACATAATTGACATCAGCAACACGCTCTGCACACAGTGGCCTACTCTGTTGGAAGCTCTGGCTACAAGAAACGATGAAACCCCTCACCTTAAACTCACGGTTGTTAGCATAGNTGGGTCTGTTATGAAGGAAGTTGGTCAACGGATGGAGAAGTTTGCGAGGCTAATGGGTGTGCCCTTTGAATTGAATGTGATAAGTGGGTTGAGTCATCTTGGGGAACTCACAAAGGAATTGCTTGGTGTTCAAGAGGGTGAGGCTATAGCTGTTAATTGTGTTGGGGCATTGAGGAGGGTGCAAGTGGAAGAGAGGGAAGGTGTCATAAGAATGTTCAAATCACTTAGTCCTAAAGTGGTTACTGTTGTTGAGGAGGAAGCTGATTTTGTTAGTTCAGGGGATGATTTTGTGAAGTGCTTTGAGGAGTGTCTTAGGTTTTACACACTCTATTTTGAGATGCTTGAGGAGAGTTTTCCAATGACGAGTAATGAGAGGTTGATGTTGGAGAGGGAGTGTTCTAGAAGCATAGTTAGGGTTTTGGCTTGTAATAATGGTGGTGATGGGTTTGTTGAAGATGGTGGTGGTAACTGTGAGAGAAGGGAGAGAGGGACACAGTGGTGTGAGAGGTTTATTAGGAATGAGTTTTCAGCAGGTGGGTTCAGTGATGATGTTGTGGATGATGTGAAGGCATTGCTCAAGAGGTACCAAGCTGGGTGGTCCCTTGTGGTGCCTCAAACTCAAGGAGATGCTGCAGGAATTTACCTCACATGGAAAGAGGAACCAGTAGTTTGGGCATCAGCATGGAAACCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00004	2729	4081	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008356 asymmetric cell division

GO:0009956 radial pattern formation

GO:0048366 leaf development

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000004s00000370.1	PF03514.9	GRAS	73	449	8.90E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.731
SRR1783600	control	4.987
SRR1783602	moderate drought stress	9.592
SRR1811619	moderate drought stress	9.468

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.987
DRR006520	Root Summer glycyrrhizin high producing strain	19.418
DRR006521	Root Winter glycyrrhizin high producing strain	0.312
DRR006522	Root Winter glycyrrhizin high producing strain	0.321
DRR006523	Root Summer glycyrrhizin low producing strain	9.848
DRR006524	Root Summer glycyrrhizin low producing strain	9.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.045
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.142

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.619
SRR2868004	Drought Stress (root)	17.487
SRR2967015	Control (root)	7.187

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.721
SRR9715740	Leaf	1.070
SRR9715741	Leaf	1.283
SRR9715739	Root	4.393
SRR9715742	Root	15.074
SRR9715743	Root	13.752

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.099
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.057
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.810
SRR8400027	Control - Root	11.191