Gene detail

Gene detail information of Glyur000003s00001251

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46210.6	2.00E-90	Ribosomal protein S5 domain 2-like superfamily protein
NR	XP_004492714.1	7.77E-137	PREDICTED: exosome complex exonuclease RRP46 homolog isoform X1 [Cicer arietinum]
COG	YP_003434757.1	6.00E-23	exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Swissprot	tr\|Q84T68\|EXOS5_ORYSJ	7.00E-93	Exosome complex exonuclease RRP46 homolog
trEMBL	tr\|G7L3K7\|G7L3K7_MEDTR	2.00E-136	Exosome complex exonuclease RRP46 {ECO:0000313\|EMBL:AES80127.1}

Sequence

Transcript Sequence

>Glyur000003s00001251.1
AAAAAAAGGAAAAACGAAAAGCTAAAAGCTAAAAACCAAAAACAGAGCCCTAAGCTCTCAACTGCGGAATAAGCCCTTAAGCAGTCACCCAGCAGAGAGGGAAGGGTCTTCATCTTTTCTTGCTGAGCAGCACCCATCGCTATTCACTTGTTGTGAGTTTGTGACTGAGAGTTACTGCTATTCACTTCCTTCCCGTTTGTCCACATCACCGCCGCTGCCGCCACTCTACGTCGCCGCCGGTTGCAGTGTTCCTCTTGTTTTGTCTGTTGAGTGGGTTCAGAAGGAAAGGTGGTCTTATCTTAGCATTTTGGGTTCTCATCCCAAAGGTGGCACGTGAAAGTTTAGGGATCTCATGGAGACAGACAGACCTGACGGCAGGAGTCCCAATCAACTGAGGCCCTTGGCCTGCTCTCGTTCTGTCCTCCATCGGGCCCACGGCTCAGCCACCTGGGCTCAAGGAGAAACCAAAGTCCTTGCTGCAGTTTATGGACCCAAAGCCGGAACCAAGAAGAACGAAAATCCTGAAAAAGCTTCCATTGAGGTTATTTGGAAGCCCAACACAGGACACATTGGTCAAGCAGAGAAGGAGTATGAGATGATATTAAAGAGAACATTGGAAAGCATCTGCATTCGTACCGTATATCCCAACACCACCACTTCTGTTATAGTCCAGGTTGTCCATGATGATGGTGCTCTTCTTCCATGTGCAATAAATGCAGCATGCGCTGCACTTGTCGATGCTGGAATTCCCCTAAAACATCTTGCTGTTGCAATATGTTGTTCGGTAACAGATAGTAGTTGCATTATATTGGACCCTACTAAACACGAAGAGGAGAAAGCAAAAGCATTTGCATATTTAGTTTTTCCAAATACAATAGTTTCAGTCCTACCAGAGAAATCATTGCAAGTTGGCAGTGAGCCCATGGCACATGGAATCATCACATCTGTTACACAGGGTGCTATGTCAGGTATTCTGCCACAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	840666	844018	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001251.1	PF01138.16	RNase_PH	13	133	7.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.726
SRR1783600	control	0.826
SRR1783602	moderate drought stress	1.435
SRR1811619	moderate drought stress	0.929

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.560
DRR006520	Root Summer glycyrrhizin high producing strain	7.820
DRR006521	Root Winter glycyrrhizin high producing strain	7.683
DRR006522	Root Winter glycyrrhizin high producing strain	7.674
DRR006523	Root Summer glycyrrhizin low producing strain	10.432
DRR006524	Root Summer glycyrrhizin low producing strain	10.795
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.175
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.567
SRR2868004	Drought Stress (root)	5.829
SRR2967015	Control (root)	9.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.269
SRR9715740	Leaf	0.237
SRR9715741	Leaf	0.255
SRR9715739	Root	0.051
SRR9715742	Root	0.091
SRR9715743	Root	0.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.368
SRR8749028	MeJA induced 9h	17.738
SRR8749029	MeJA induced 9h	21.517
SRR8749030	Uninduced	4.357
SRR8749031	Uninduced	3.612
SRR8749032	Uninduced	4.543

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.109
SRR8400027	Control - Root	0.144