Gene detail information of Glyur000003s00001250 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11610.1 | 0 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| NR | XP_004492713.1 | 0 | PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cicer arietinum] |
| Swissprot | tr|Q9ZVT9|C2GR1_ARATH | 3.00E-13 | C2 and GRAM domain-containing protein At1g03370 |
| trEMBL | tr|G7L3K6|G7L3K6_MEDTR | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein {ECO:0000313|EMBL:AES80126.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 836159 | 839224 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001250.1 | PF00168.25 | C2 | 7 | 78 | 7.00E-12 |
| Glyur000003s00001250.1 | PF00168.25 | C2 | 282 | 362 | 1.90E-17 |
| Glyur000003s00001250.1 | PF00168.25 | C2 | 446 | 526 | 1.50E-14 |
| Glyur000003s00001250.1 | PF00168.25 | C2 | 616 | 702 | 1.40E-13 |
| Glyur000003s00001250.1 | PF08372.5 | PRT_C | 866 | 1021 | 1.80E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.076 |
| SRR1783600 | control | 2.090 |
| SRR1783602 | moderate drought stress | 1.277 |
| SRR1811619 | moderate drought stress | 1.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.564 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.633 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.654 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.602 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.949 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.914 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.571 |
| SRR2868004 | Drought Stress (root) | 59.311 |
| SRR2967015 | Control (root) | 69.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.910 |
| SRR9715740 | Leaf | 38.319 |
| SRR9715741 | Leaf | 43.055 |
| SRR9715739 | Root | 5.479 |
| SRR9715742 | Root | 14.157 |
| SRR9715743 | Root | 12.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.228 |
| SRR8749028 | MeJA induced 9h | 28.583 |
| SRR8749029 | MeJA induced 9h | 25.566 |
| SRR8749030 | Uninduced | 38.648 |
| SRR8749031 | Uninduced | 75.928 |
| SRR8749032 | Uninduced | 41.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.327 |
| SRR8400027 | Control - Root | 13.201 |