Gene detail information of Glyur000003s00001245 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23750.2 | 3.00E-22 | Remorin family protein |
| NR | XP_003623893.1 | 1.35E-30 | Remorin [Medicago truncatula] |
| Swissprot | tr|P93788|REMO_SOLTU | 2.00E-28 | Remorin |
| trEMBL | tr|G7L3J1|G7L3J1_MEDTR | 5.00E-31 | Carboxy-terminal region remorin {ECO:0000313|EMBL:AES80111.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 811570 | 813129 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001245.1 | PF03763.8 | Remorin_C | 9 | 72 | 9.90E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.254 |
| SRR1783600 | control | 26.087 |
| SRR1783602 | moderate drought stress | 34.973 |
| SRR1811619 | moderate drought stress | 37.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 40.511 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.514 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.849 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.826 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.506 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.921 |
| SRR2868004 | Drought Stress (root) | 37.507 |
| SRR2967015 | Control (root) | 40.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.241 |
| SRR9715740 | Leaf | 3.252 |
| SRR9715741 | Leaf | 3.509 |
| SRR9715739 | Root | 2.465 |
| SRR9715742 | Root | 5.667 |
| SRR9715743 | Root | 5.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.255 |
| SRR8749028 | MeJA induced 9h | 11.614 |
| SRR8749029 | MeJA induced 9h | 13.677 |
| SRR8749030 | Uninduced | 13.448 |
| SRR8749031 | Uninduced | 4.839 |
| SRR8749032 | Uninduced | 7.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.903 |
| SRR8400027 | Control - Root | 41.571 |