Gene detail information of Glyur000003s00001231 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61220.1 | 2.00E-94 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_004493025.1 | 0 | PREDICTED: uncharacterized protein LOC101510344 [Cicer arietinum] |
| COG | YP_003888420.1 | 7.00E-45 | short-chain dehydrogenase/reductase SDR [Cyanothece sp. PCC 7822] |
| Swissprot | tr|Q9M2E2|SDR1_ARATH | 2.00E-113 | (+)-neomenthol dehydrogenase |
| trEMBL | tr|A0A061DTA4|A0A061DTA4_THECC | 0 | NAD(P)-binding Rossmann-fold superfamily protein {ECO:0000313|EMBL:EOX96034.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 735930 | 743183 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15095 | E1.1.1.208 | EC:1.1.1.208 | Monoterpenoid biosynthesis | map00902 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001231.1 | PF00106.20 | adh_short | 9 | 163 | 1.40E-21 |
| Glyur000003s00001231.1 | PF00106.20 | adh_short | 286 | 431 | 4.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.882 |
| SRR1783600 | control | 3.958 |
| SRR1783602 | moderate drought stress | 5.160 |
| SRR1811619 | moderate drought stress | 5.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.231 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.129 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.173 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.012 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.257 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.591 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.976 |
| SRR2868004 | Drought Stress (root) | 45.778 |
| SRR2967015 | Control (root) | 19.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.176 |
| SRR9715740 | Leaf | 37.403 |
| SRR9715741 | Leaf | 24.837 |
| SRR9715739 | Root | 20.322 |
| SRR9715742 | Root | 18.522 |
| SRR9715743 | Root | 19.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.033 |
| SRR8749028 | MeJA induced 9h | 17.014 |
| SRR8749029 | MeJA induced 9h | 23.242 |
| SRR8749030 | Uninduced | 6.939 |
| SRR8749031 | Uninduced | 10.406 |
| SRR8749032 | Uninduced | 27.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.309 |
| SRR8400027 | Control - Root | 15.504 |