Gene detail information of Glyur000003s00001218 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62150.1 | 5.00E-23 | peptidoglycan-binding LysM domain-containing protein |
| NR | XP_003534586.1 | 4.36E-51 | PREDICTED: uncharacterized protein LOC100778431 [Glycine max] |
| trEMBL | tr|I1L6P2|I1L6P2_SOYBN | 2.00E-51 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G39930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 679729 | 681038 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001218.1 | PF01476.15 | LysM | 61 | 102 | 0.00022 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.209 |
| SRR1783600 | control | 1.155 |
| SRR1783602 | moderate drought stress | 1.457 |
| SRR1811619 | moderate drought stress | 1.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.914 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.811 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.754 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.836 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.806 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.730 |
| SRR2868004 | Drought Stress (root) | 33.252 |
| SRR2967015 | Control (root) | 19.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.650 |
| SRR9715740 | Leaf | 5.473 |
| SRR9715741 | Leaf | 2.240 |
| SRR9715739 | Root | 5.022 |
| SRR9715742 | Root | 5.067 |
| SRR9715743 | Root | 5.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.315 |
| SRR8400027 | Control - Root | 4.192 |