Gene detail information of Glyur000003s00001211 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | AES80071.2 | 6.98E-135 | vacuolar iron transporter-like protein [Medicago truncatula] |
| COG | YP_002939927.1 | 5.00E-32 | hypothetical protein Kole_0198 [Kosmotoga olearia TBF 19.5.1] |
| Swissprot | tr|Q8W4P8|MEB1_ARATH | 9.00E-08 | Membrane protein of ER body 1 |
| trEMBL | tr|G7L2H7|G7L2H7_MEDTR | 3.00E-135 | Vacuolar iron transporter-like protein {ECO:0000313|EMBL:AES80071.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 652187 | 654575 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001211.1 | PF01988.14 | VIT1 | 41 | 242 | 2.00E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.338 |
| SRR1783600 | control | 2.507 |
| SRR1783602 | moderate drought stress | 3.042 |
| SRR1811619 | moderate drought stress | 2.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.838 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.910 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.514 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.462 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.125 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.126 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.101 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.043 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.198 |
| SRR8749028 | MeJA induced 9h | 0.386 |
| SRR8749029 | MeJA induced 9h | 0.260 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.748 |
| SRR8749032 | Uninduced | 1.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |