Gene detail information of Glyur000003s00001207 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01880.1 | 0 | 5'-3' exonuclease family protein |
| NR | XP_003623847.1 | 0 | Flap endonuclease GEN-like protein [Medicago truncatula] |
| COG | NP_146975.2 | 4.00E-23 | flap endonuclease-1 [Aeropyrum pernix K1] |
| Swissprot | tr|Q9LPD2|GENL1_ARATH | 0 | Flap endonuclease GEN-like 1 |
| trEMBL | tr|A2Q3P8|A2Q3P8_MEDTR | 0 | Helix-hairpin-helix motif, class 2 {ECO:0000313|EMBL:ABN08248.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00003 | 633215 | 637899 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000003s00001207.1 | PF00752.12 | XPG_N | 1 | 89 | 3.30E-08 |
| Glyur000003s00001207.1 | PF00867.13 | XPG_I | 129 | 213 | 1.10E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.759 |
| SRR1783600 | control | 5.691 |
| SRR1783602 | moderate drought stress | 8.846 |
| SRR1811619 | moderate drought stress | 8.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.352 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.074 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.363 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.203 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.629 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.813 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.431 |
| SRR2868004 | Drought Stress (root) | 10.363 |
| SRR2967015 | Control (root) | 10.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.888 |
| SRR9715740 | Leaf | 1.264 |
| SRR9715741 | Leaf | 1.528 |
| SRR9715739 | Root | 0.585 |
| SRR9715742 | Root | 4.199 |
| SRR9715743 | Root | 3.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.799 |
| SRR8749028 | MeJA induced 9h | 5.337 |
| SRR8749029 | MeJA induced 9h | 5.073 |
| SRR8749030 | Uninduced | 3.794 |
| SRR8749031 | Uninduced | 3.769 |
| SRR8749032 | Uninduced | 5.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.138 |
| SRR8400027 | Control - Root | 6.483 |