Gene detail

Gene detail information of Glyur000003s00001206

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01860.1	3.00E-126	Ribosomal RNA adenine dimethylase family protein
NR	XP_003552364.1	0	PREDICTED: probable dimethyladenosine transferase-like [Glycine max]
COG	YP_003709872.1	4.00E-56	dimethyladenosine transferase [Waddlia chondrophila WSU 86-1044]
trEMBL	tr\|I1N3K9\|I1N3K9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G46220.1}

Sequence

Transcript Sequence

>Glyur000003s00001206.1
CTTATATTACTGGGAGGAGACTGTAACGGGAATAACGAACAACTGAAAAACATGTCTTCTTCACAGTTATGTTCTCTTCAAACGCTCAACTGCCGCCCGAAACCGCCGCTACCGGCGCAATATAGCACCGCCGTCGCACGGCGGCGAACGGTATACGTAGCTTGTGGTGGCGGAAGCAGCAGAGCTTCTACGCGGAACACAGACGATTATCATGCCACTCTCAAAGCTCTTAACTCCAAAGGCAGATTCCCCAGAAAATCTCTCGGCCAGCATTATATGTTGAACTCTGACATAAATGAGCAACTTGCTGGTGTGGCTGGTGTTGAGCAAGGTGATGTGGTATTGGAAATTGGGCCAGGAACTGGTTCCTTGACCAATGTTCTCATAAATGCTGGCACATTTGTTCTCGCGGTTGAGAAGGATAAACACATGGCTGAACTTGTGAGTGAAAGATTTTCAAGTACAGGAAAGTTCAAGGTTTTGAANGAGGATATTGTCAAATGTCATGTGCGCTCTCATATGTCATCATTGGTTGGAAGCANAAAGCAAACAGATCCAGAAACTAGAAGTGCAAAAGTGGTTGCCAACATTCCTTTCAATATCAGTACAGATGTGATCAAACTACTTCTTCCAATGGGTGACATCTTCTCAGAAGTGGTTCTATTACTCCAGGAGGAGACTGCCCTGCGCTTGGTAGTATCATCACTCCGGACCTCTGAGTATCGTCCCATCAATATATTTGTTAATTTCTACTCAGATCCTAAGTACAAATTTAAGGTCCCAAGAACAGATTTTTTCCCTCAGCCAAATGTTGATGCAGCCGTTGTCTCATTCAAGCTGAAGCCACCATCAGAATATCCCCAAGTTTCTTCCAGTAAAAGCTTCTTCTCTATGGTTAATTCAGCATTCAATGAGAAGCGTAAGATGTTGCGCAAGTCGCTTCAGCACATATGCTCATCCCTTGAGATAGAAGAAGCTTTAAAAAGCATAGGTCTTCTAACTACCTCAAGGCCTGAAGAACTAACATTGGATGATTTTGTAAAGCTGCACAACTTGATTACTAAAGAGTAGCACTTTGGATTACTGTGGAATTGTAGAGCAAACTCTAGCAGAAGAAGACCCCAGAGATTCCCACATTCATAAGGCTCTTTGTTGCAGCTGATATATATATGATTCAAACAGAGAACCAAAGTATTAAGGAGAGTTATGGCATCTCAGGTTGGGGATATATATATGTTTCAAGAATAGGGGCATGATGTTCATATCTGAAAGAAAGAAAGTAGGTTCATACCCCATATCCATTCAGTTAATATACTTTAGACTGAACTCCNTTTGTGCTATGTATAAATATAATCCTCTAAGTTTCACTGCCACAAAGGCACTTGTATTGTAGCTATTCCTGAAGCTGAAACAGGTTTTTGCCATATCATAAATGGGAAAATGAACACATTTTTTCATTTCAATTCAAATACTGATTAACTAAATATATAGCTAATATAACCAATAAAATGACACACCACAGATAATTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	627675	632165	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000154 rRNA modification

GO:0006364 rRNA processing

molecular_function

GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity

GO:0008649 rRNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001206.1	PF00398.15	RrnaAD	68	338	1.80E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.898
SRR1783600	control	6.876
SRR1783602	moderate drought stress	6.040
SRR1811619	moderate drought stress	5.907

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.746
DRR006520	Root Summer glycyrrhizin high producing strain	7.809
DRR006521	Root Winter glycyrrhizin high producing strain	4.644
DRR006522	Root Winter glycyrrhizin high producing strain	4.543
DRR006523	Root Summer glycyrrhizin low producing strain	5.247
DRR006524	Root Summer glycyrrhizin low producing strain	5.114
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.102
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.794
SRR2868004	Drought Stress (root)	6.209
SRR2967015	Control (root)	6.264

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.519
SRR9715740	Leaf	13.868
SRR9715741	Leaf	9.383
SRR9715739	Root	1.122
SRR9715742	Root	3.391
SRR9715743	Root	2.705

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.341
SRR8749028	MeJA induced 9h	3.017
SRR8749029	MeJA induced 9h	2.925
SRR8749030	Uninduced	0.602
SRR8749031	Uninduced	0.496
SRR8749032	Uninduced	0.334

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.817
SRR8400027	Control - Root	10.488