Gene detail

Gene detail information of Glyur000003s00001199

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45720.2	0	ARM repeat superfamily protein
NR	XP_007139942.1	0	hypothetical protein PHAVU_008G071700g [Phaseolus vulgaris]
Swissprot	tr\|Q5VRH9\|PUB12_ORYSJ	2.00E-09	U-box domain-containing protein 12
trEMBL	tr\|G8DCY0\|G8DCY0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW11936.1}

Sequence

Transcript Sequence

>Glyur000003s00001199.1
ATGGTGGAAGATGGTAGAGATGAGGTTGCAGGTTCAACAGAAGAGTGGTTGTTGCATGCACAGGAACTTGTTCCTATTGCACTTGATAAGGCAAGAGAGGTTAAGGGGTTCCCTGGTAGATGGAAGATGATCATTTCCAAATTGGAACAGATCCCATCAAGNTTATCAGACTTGTCAAGCCATCCATGCTTCTCAAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTNAAAGACACTCAGAGAATCAATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGAAAGCTTAGGATGCAGAGTGATCTTGATGCATTAACTGGGAAACTTGACTTGAATTTAAGGGATTGTGGTCTTTTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTGNCTTTGTCAGTGGTGGCAGAATCAGATGACGCTGTTGCAACTCACAACAACAACATAAGGGAATTGCTGGCACGCCTTCAGATCGGTCACTTGGAAGCAAAGCACAAGGCTTTGGACAGTGTTGTTGAGGCAATGAAAGAAGATGAGAAGAATGTGTTGGCTGTTCTGAGCAGGAGCAACATTGTTGCATTGGTTCAATTGCTCACAGCCACATCATCTCCAAGGATAAGAGAGAAGACGGTTACCATCATATGCTCGCTCGCGGAATCCGGTAGCTGCGAGAATTGGCTTGTTTCCGAGGGAATTCTTCCGCCTCTCATAAGGCTTGTGGAATCAGGAAGTCCTGTTGGTAAAGAGAAGGCTACAATATCCCTTCAGAGGCTGTCAATGTCAGCGGAAACAGCCCGNGAAATCGTTGGACACGGCGGGGTTAGTCCACTTGTTGAGCTTTGTCAAACTGGTGATTCTGTGTCACAGGCTGCTGCAGCCTGTACACTGAAGAATCTATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAGGAAGGGGTTGTGAGGGTCATGATCAATCTTCTTACCTGTGGNATGCTTTTGGGTTCTAANGAGTATGCAGCTGAGTGCTTGCAGAATCTCACTGCAAGCAATGAGAATCTAAGGAGGAGTGTCGTGTCNGAAGGCGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTCCCTCAGGAATCTGCTGTTGGGGCACTGAGGAATTTGGTTGGTTCAGTCTCTGAGGAAACCTTGGTTTCATTGGGTCTCTTACCGCGTTTGGTCCATGTGCTAAAGTCTGGATCTTTAGGTGCACAGCAAGCAGCTGTGGCTGTGATCGTCCGGGTTTGCAGCTCAACGGAGATGAAGAGAATGGTTGGTGAAGCTGGATGCATCCCTCTCCTTGTCAAGATGCTTGAGGCCAAATCAAACAGTGCTAGAGAGGTTGCTGCACAAGCAATAGCAAGCTTGATGGTTGTGTCTCAAAACCGAAGGGAAGTTAAGAAGGGTGATAAGAGTGTGCCAAATTTGGTTCAGTTGCTTGATCCTAGCCCCCAGAACACTGCAAAGAAGTATGCAGTTTCATGCCTTGGATCACTGTCTTCAAGTAAGAAGTGTAAGAAGCTAATGATCTCTTATGGGGCAATTGGGTATCTGAAGAAACTCACTGAGATGGACATTCCAGGAGCTAGAAAGCTACANGAGAGATTGGAAAGAGGGAAATTAAGAAGTTTGTTTAGCAAGAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	587366	589042	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001199.1	PF00514.18	Arm	266	305	1.80E-06
Glyur000003s00001199.1	PF00514.18	Arm	429	466	9.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.653
SRR1783600	control	0.655
SRR1783602	moderate drought stress	0.681
SRR1811619	moderate drought stress	0.687

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.151
DRR006520	Root Summer glycyrrhizin high producing strain	2.146
DRR006521	Root Winter glycyrrhizin high producing strain	0.200
DRR006522	Root Winter glycyrrhizin high producing strain	0.195
DRR006523	Root Summer glycyrrhizin low producing strain	2.397
DRR006524	Root Summer glycyrrhizin low producing strain	2.384
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.858
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.870

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.118
SRR2868004	Drought Stress (root)	4.518
SRR2967015	Control (root)	4.523

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.187
SRR9715740	Leaf	2.230
SRR9715741	Leaf	1.597
SRR9715739	Root	0.274
SRR9715742	Root	1.605
SRR9715743	Root	1.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.914
SRR8749028	MeJA induced 9h	0.464
SRR8749029	MeJA induced 9h	0.379
SRR8749030	Uninduced	0.171
SRR8749031	Uninduced	0.146
SRR8749032	Uninduced	0.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.004
SRR8400027	Control - Root	3.338