Gene detail

Gene detail information of Glyur000003s00001198

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01820.1	1.00E-115	peroxin 11c
NR	AFK46771.1	1.10E-156	unknown [Lotus japonicus]
Swissprot	tr\|Q9LQ73\|PX11C_ARATH	3.00E-146	Peroxisomal membrane protein 11C
trEMBL	tr\|I3T2M9\|I3T2M9_LOTJA	4.00E-157	Uncharacterized protein {ECO:0000313\|EMBL:AFK46771.1}

Sequence

Transcript Sequence

>Glyur000003s00001198.1
CATTATCGAACGAAGCATATTGTGAGTTGCAAGTTTCCAACGTGTGACCCGTTGACATCGGACTCATCGAACGGTTCAACATTCTCCCAAACGAGGGTGACCAAACCATTNCACAATAATCCCACTTTTTGTTTGTTTGTTTTGGGAAACAGAGAACCAAACAAGCCCTTATCACAACTCCATCCCCTCCACAGGCCCAAACCATAGCCAAATCTCTCTTCTCGCTCTGTGTGATTCTGATTACCGAACATAATTTCCTCTTTGGGCACTTTTTTCGCGATTACTAATTAGCATAGAAAATGAGTACATTGGATGCAACTAGGGCAGAACTTGGTCTTCTTGTTCTGTATTTGAACAAGGCTGAGGCAAGGGACAAGATATGCAGAGCAATACAATATGGTTCCAAATTTTTGAGTAATGGGGAACCTGGCACTGCACAAAATGTGGACAAATCAACCAGCTTGGCACGAAAAGTTTTCCGTCTATTTAAGTTTGTCAATGACCTGCATGGTCTGATAAGTCCAACACCACAGGGTACACCCCTCCCCCTAATTCTGTTGGGAAAGTCCAAGAATGCATTACTGTCCACTTTCTTGTTTCTTGATCAATTCGTGTGGCTTGGTAGATCNGGCATCGACAAGAACAAAGAACGCACCGAACTAATCGGCCGGATTTCTCTCTTCTGCTGGATGGGTTCCTCAGTGTGTACCACCTTGGTTGAGCTCGGGGAGCTTGGAAGACTCTCTGCATCAATGAAGAAGATAGAGAAAGAACTCAAGAACAGCAATAAGTATGATAATGAGCAATACCGGGCCAAGCTAAAAAAGTCAAATGAGAGGACTCTAGCACTTATCAAAGCAGGCATGGATATAGTGGTAGCAGTTGGACTGCTTCAATTGGCACCCAAGAAAGTCACTCCNCGCGTGACTGGGGCATTTGGATTTGTTACCTCTCTAATATCTTGCTATCAGTTGCTTCCTGCNCCTACCAAGTCAAAAACATCATGAACATGGAAAAGAATAGACTTGCCTCTCATCATGCTTCCTTGTTATTAAATAATTGTACTGTACGAATTTGTCAGGAANTGTTGATTGGTGTGAGCATCCACNTACTTTCATCTTGGTAGAAAACAAGGCCCCGTTTGGAATTGTTTTCAAAAACCATTTTGTCGTTTTGGGTATTTGTCTGTCTTCAAATATATTGTATTGCTCTTTCATTTATAAATACATACATTTATCCTCTCAAGATATATGCAACGTCAAATTAGTTCTTTAATGGTTTCAGTGTCATTAAAAATGGGGCCTTCAAATTTCCTCAAATGGGTAATGCATTGAAACAAGTTTACTTTAAGGGGATTTTTTTTCTTTTATTTTGAGTTAAATTACTTCACATGAAACATATTATGGGTTTTTGGATTTGGACATTGTACATATTAAGGCATTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	579617	584202	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016559 peroxisome fission

cellular_component
GO:0005779 integral component of peroxisomal membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001198.1	PF05648.9	PEX11	13	226	1.50E-46
Glyur000003s00001198.3	PF05648.9	PEX11	40	253	2.20E-46
Glyur000003s00001198.4	PF05648.9	PEX11	13	226	1.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.509
SRR1783600	control	46.155
SRR1783602	moderate drought stress	38.952
SRR1811619	moderate drought stress	39.662

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.240
DRR006520	Root Summer glycyrrhizin high producing strain	57.738
DRR006521	Root Winter glycyrrhizin high producing strain	64.042
DRR006522	Root Winter glycyrrhizin high producing strain	62.938
DRR006523	Root Summer glycyrrhizin low producing strain	51.410
DRR006524	Root Summer glycyrrhizin low producing strain	50.622
DRR006525	Leaf Summer glycyrrhizin high producing strain	165.913
DRR006526	Leaf Summer glycyrrhizin high producing strain	165.669

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	88.579
SRR2868004	Drought Stress (root)	100.049
SRR2967015	Control (root)	77.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	199.865
SRR9715740	Leaf	253.064
SRR9715741	Leaf	217.178
SRR9715739	Root	26.424
SRR9715742	Root	38.212
SRR9715743	Root	36.501

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	84.228
SRR8749028	MeJA induced 9h	96.314
SRR8749029	MeJA induced 9h	121.505
SRR8749030	Uninduced	81.872
SRR8749031	Uninduced	116.436
SRR8749032	Uninduced	142.421

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.513
SRR8400027	Control - Root	75.875