Gene detail

Gene detail information of Glyur000003s00001189

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00720.1	0	shaggy-like protein kinase 32
NR	XP_004492676.1	0	PREDICTED: shaggy-related protein kinase theta-like [Cicer arietinum]
COG	YP_008149401.1	2.00E-23	hypothetical protein SCE1572_14835 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q96287\|KSG8_ARATH	0	Shaggy-related protein kinase theta
trEMBL	tr\|G7L1H1\|G7L1H1_MEDTR	0	Shaggy-like kinase {ECO:0000313\|EMBL:AES80040.1}

Sequence

Transcript Sequence

>Glyur000003s00001189.1
GTGTTGTTTTGGCCTCCATTTTCTCTCTCATTTTCCTCCTACGTTTTGTGTTTGCAGGGAGGAAACTCAGACAGGGGAAGAGAGAGAGAGAGAGAGAGAGACAAGAGAGAGAAACCTCATCTCTCTCTTTCCTTCCTTGTGTTTCTCTCTTTTGTTTTTGGCCAAAAAAAAGTTCTTTTGGGGTGTGGATTGAGTTTTGTTGTGGGGGTTGGAATCAGTAACTACTATGAATATGATGCGAAGGTTGAAAAGCATTGCTTCTGGGAGGACCTCTATTTCATCAGATCCTGGAGGGGATTCTACNACAAAAAGAGCCAAGTTTGATCAAGAGGATAATGTGGAAACAAATGCAGTTGAGAGAGGCAGCAGAAATCAGGAGCAGCANGCAGATGCATCAAAAGAAACTACAGTTGGCACATCTAATTCCAATGTATCTACAGTGGCTAGAGCTGAGAACAAGACAGGTTATGATCAGCTTCCTAAAGAATTACATGAAATGAAAATCAAAGACGATAAAGGCAAAAACAACAATGAAAAGGATATGGAGCCAACTGTTGTGAACGGAAGTGGAACAGAAACGGGTCAAATAATTACAACTGCTATCGGTGGTCGAGATGGACAACCAAAGCGGACAATCTCATACATGGCAGAACGTGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTATCAGGCTAAGTGCCTTGAAACCGGTGAAGCCGTTGCAATAAAGAAAGTCTTACAAGACAAGAGATACAAGAATAGGGAACTCCAGGTTATGCGTATGCTTGACCATACTAATGTTCTTAAACTAAAGCACTGTTTCTACTCGACGGCGGAGAAGGATGATTTGTACCTTAACCTTGTTTTGGAGTATGTACCTGAAACCGTCTACAGAGTTTCAAAGCACTATGTCAGGATGCACCAACACATGCCTATCATTTATGTGCAACTGTATGCTTATCAGATATGTCGTGGTTTAAATTATATGCATCATGTGGTCGGAGTCTGTCATCGTGACATAAAACCCCAGAATCTATTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAAATGTTGGTGCCTGGTGAACCCAACATATCATACATATGCTCGCGGTATTATAGAGCTCCTGAACTTATATTTGGGGCAACGGAATACACAACTGCTATTGATATATGGTCTGCTGGCTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCATTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTGGTAGAGATCATTAAGATCTTGGGAACACCAACCAGAGAAGAAATAAGGTGCATGAATCCAAATTACACTGAATTTAAGTTTCCTCAGATTAAAGCGCACCCGTGGCACAAGGTTTTTCACAAAAGGACGCCTCCTGAAGCNGTGGATCTTGTGTCAAGGATGCTTCAATATTCACCAAATCTACGTTGCACTGCTTTGGATGCATGTGCACACCCCTTCTTTGATGATCTGCGAGAACCAAATGCGTGCTTACCNAATGGGCAATCACTACCTCCTTTGTTTGATTTCACAGCTCAAGAATTGGCAGGCGCNCCTGATGAGTTGCGTCGGCGTCTCATTCCTGAGCATGCAAGAAGTTAAAATTTTTGTTGGGCATTGTAAATGGGTTTTTCGATGAATAGATAACCACACCAGTAATGCTACCTTCCCTAACAGTTGAGGTCTCTGCTGTCCAACCTGCACAATCATGGCTATACCACACTCATTTGAACCCCAAAACCATGCAACCTCTTTATCAAGGACCTGCAGATGGCAATCACATGGGTGATNTGATGAAGTAGGAGTGCCTGCTGAAAGGGTTGCATCCATTTTTTTAGTTTATGATTGATGTATGCCTCAATTTTAAAAGATAATGAGCTCTTACAAATTCTTTACTCATGTTTCATATAGTTCTAGCTTGCTTGTTCCTCAAAGTGGACTATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	456495	461382	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001189.1	PF00069.20	Pkinase	142	423	8.80E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.849
SRR1783600	control	23.873
SRR1783602	moderate drought stress	34.089
SRR1811619	moderate drought stress	33.686

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.680
DRR006520	Root Summer glycyrrhizin high producing strain	23.429
DRR006521	Root Winter glycyrrhizin high producing strain	29.272
DRR006522	Root Winter glycyrrhizin high producing strain	28.695
DRR006523	Root Summer glycyrrhizin low producing strain	43.682
DRR006524	Root Summer glycyrrhizin low producing strain	43.536
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.827
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	88.593
SRR2868004	Drought Stress (root)	107.652
SRR2967015	Control (root)	99.193

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.318
SRR9715740	Leaf	42.156
SRR9715741	Leaf	71.664
SRR9715739	Root	11.544
SRR9715742	Root	32.322
SRR9715743	Root	30.074

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	136.718
SRR8749028	MeJA induced 9h	77.632
SRR8749029	MeJA induced 9h	114.196
SRR8749030	Uninduced	122.556
SRR8749031	Uninduced	213.613
SRR8749032	Uninduced	157.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.254
SRR8400027	Control - Root	47.922