Gene detail

Gene detail information of Glyur000003s00001181

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45760.1	3.00E-19	BON association protein 2
NR	AFK45032.1	1.16E-52	unknown [Lotus japonicus]
Swissprot	tr\|Q58FX0\|BAP2_ARATH	2.00E-22	BON1-associated protein 2
trEMBL	tr\|I3SXP0\|I3SXP0_LOTJA	4.00E-53	Uncharacterized protein {ECO:0000313\|EMBL:AFK45032.1}

Sequence

Transcript Sequence

>Glyur000003s00001181.1
ATGTCTCGCACTATAGAAATCACCATTTTGTCAGCAGAAAACCTCCATGTGAACAAGAAATACATAAAGAAAAAAGCTTTATTTGTTTCTCTTCAATCTGATTCAATTAGCAGTGACATTTGTTGTTGTTCCACCAAGGTGAATTCAGAAGAAGGAGGCTTCCCTTCATGGAATGAGAAGCTTGTGATGGAGTTACCATTGAATGCAAGGTTTATAACAGCAGAGGTGAAATGCAAAGCAGCATCAAGAGGGGTTAATAGTTGTAAGAGTACTGTTGGAATGGCTAGAATACCAGTGTCAGATTTTTTGGATCATATTGTGCAAGAGAACCAAGTGCAGTTTCTGAGTTATAGGCTANGGGACAGTGAGATGAGGAGAAATGGGGTTATCAATGTTTCTGTGAGGGTGAAAGTGCCGGAATATTCTCTTCCGGTGACTGGAATGCCGGTGGCCGGCGATGGTTCCACTCGGGTTGTAATTGGGGTTCCAATACTCACTCACTTTACTCAACCCAATCCAACCCAAACCAAACCAAACCAAATGGACAAAACCCACCCGCACAGAACACTAGAGCTCACCGTCCTGGCAGCGGAGGACCTCCGCGTAGACCGAAGGCTGAACACGAAGAACCTATACGTCGTCGTTCGAGCTGAGTCAATCAACTGCTACACCACCCGCACGGTCGCGGAATGCGGCGGCGACAAAGAAAGCCACCCTTCGTGGAACGAGAAGCTGTTGGTGGAGGTGCCGGTGCATGCGAGGTCGATAACCCTAGAAGTGAAATGCAAAACGACGTGGTCGTCGACNACAACAAGGGGTGCGAAGGACGTTGGGGTGGCGAGGATAGCGATGTCGGATCTTGTGGGGGGTGTTGTTCCGAGTCATTGCTTGCAGTTCTTGAGCTATAGGTTGAGGGATTGGGAAGGTAGGCGTAATGGGGTGCTTAGTTTCTCTTTCAGGGTGGTGAAGGAGTCGCCGGAGTTTGTTTTGCCGATGTTGACGGAGAAGATACTCACTCACTTTACTCAACCCAATCCAACCCAAACCAAACCAAACCAAATGGACAAAACCCACCCGCACAGAACACTAGAGCTCACCGTCCTGGCAGCGGAGGACCTCCGCGTAGACCGAAGGCTGAACACGAAGAACCTATACGTCGTCGTTCGAGCTGAGTCAATCAACTGCTACACCACCCGCACGGTCGCGGAATGCGGCGGCGACAAAGAAAGCCACCCTTCGTGGAACGAGAAGCTGTTGGTGGAGGTGCCGGTGCATGCGAGGTCGATAACCCTAGAAGTGAAATGCAAAACGACGTGGTCGTCGACNACAACAAGGGGTGCGAAGGACGTTGGGGTGGCGAGGATAGCGATGTCGGATCTTGTGGGGGGTGTTGTTCCGAGTCATTGCTTGCAGTTCTTGAGCTATAGGTTGAGGGATTGGGAAGGTAGGCGTAATGGGGTGCTTAGTTTCTCTTTCAGGGTGGAGAAGGAGTCGCCGGAGTTTGTTTTGCCGATGTCGACGGAGAAGGTGATGCCGGGTTCTCCTTGTGGGTTCCAGAATATTATGAGGACTACTGGTTGGACTGCTGCTACTACTTCTTCTTCTTCTAGTGGGACACCCATAGAGTTACTGCACAGAGAGAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	418413	425411	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001181.1	PF00168.25	C2	6	68	0.12
Glyur000003s00001181.1	PF00168.25	C2	190	266	0.00039
Glyur000003s00001181.1	PF00168.25	C2	363	439	0.00039

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.160
SRR1783600	control	1.194
SRR1783602	moderate drought stress	1.032
SRR1811619	moderate drought stress	0.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.154
DRR006520	Root Summer glycyrrhizin high producing strain	10.249
DRR006521	Root Winter glycyrrhizin high producing strain	61.206
DRR006522	Root Winter glycyrrhizin high producing strain	57.577
DRR006523	Root Summer glycyrrhizin low producing strain	9.779
DRR006524	Root Summer glycyrrhizin low producing strain	9.429
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.597
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.791

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.069
SRR2868004	Drought Stress (root)	1.421
SRR2967015	Control (root)	6.137

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.331
SRR9715740	Leaf	4.198
SRR9715741	Leaf	11.213
SRR9715739	Root	83.007
SRR9715742	Root	49.003
SRR9715743	Root	53.777

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.021
SRR8749028	MeJA induced 9h	56.081
SRR8749029	MeJA induced 9h	78.981
SRR8749030	Uninduced	81.660
SRR8749031	Uninduced	47.510
SRR8749032	Uninduced	63.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.498
SRR8400027	Control - Root	6.543