Gene detail

Gene detail information of Glyur000003s00001174

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45690.1	3.00E-94	shrunken seed protein (SSE1)
NR	XP_003521407.1	6.47E-173	PREDICTED: peroxisome biogenesis protein 16-like [Glycine max]
Swissprot	tr\|Q8S8S1\|PEX16_ARATH	3.00E-115	Peroxisome biogenesis protein 16
trEMBL	tr\|I1JKG7\|I1JKG7_SOYBN	2.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G02080.1}

Sequence

Transcript Sequence

>Glyur000003s00001174.1
ATGGTAACAACCATTCTGGGGATTATCACTGCTATCAATGAGCATATAATTGATACAGCCCCTACTGAAGATATTACAGGCTCTGTTGAACCTTATTCATTTCCTTATTCATTATGCTTATCTGCATTAAAGGATTTGGAAACATTAGTTGAAGTTGTGGCACAACAGTACTATGGCGACGATAAGAAATGGAATTTCCTTGCTGTTACCGAAGCAACAAAGGCATTGGTTCGGTTATCTTTGTTCCGGAAAAGTGGATTTAAGATGCTGCTGTCTGGAGGGGAGACTTGCAATGATGAGACAGATTCAAATGGCTCGACTTCACACCATCAAATAGGCTTAAATCCTGGTGGGAGTCATGGCTCTAATTACATGAAAAACAAACATGGTCCAAACCCACGGAATCTAGAAGGAAGAGCACTGTCTGCTTTAAGTAAATTTGGAGAAAATGTCAGGATGGTGTCCGAACCATTGCNGTTGCTTTCAGCAGTAGAGAGGTCGACAATATCCAGCATATTGTCCAAAAAGGGTCTTCATGGGGCGCTGTTTATGATAGGAGAAGTTCTATTTATTACAAGACCACTTGTTTATGTTTTATTTATTCGAAAGTATGGTATTCGGTCATGGACCCCTTGGTTCCTTTCACTGGCTATTGACTGCATAGGGATGAGCATTCTATCACTAGTTACAACATCCGCGGCTGGTGGGAAGGAGAAAATGTTTCATCNTTTTGCCCCAGAAAAGGATGAGGTTAAAAGAAGGAAGCTGTTATTTGTACTATACCTAATGAGAGATCCTTTCTTTAGCAAATATACCAGGCACAGACTTGAAAACACTGAGAAAGTTTTGGAACCAGTACCTGTCATCGGATTTCTTACCGCAAAAGCTGTTGAACTAACGATTGGAGCTCAATCGAGATACACTTACATGTCAGGATCATAATATAACATTGAAATGAAATGCTTCACTGCCTTCCCATATGTGAGAAGATGTTCTCTCTGTGCTTCCACATTCTCTTGTTGCAGATGTTTTAAATTTCAAGGAGATATCAAGTTTGCTACTGTTTTGATTGACAAGAAGCCAGGAATGTTTGGACGTTTCTTTTGCACTACAATTACCATACATTACATGGAGAGTTTGATGTGGGACAAGTTGTGTTTGCAAGGTTGAACCATTATCAACAAGTGGGGTGTAAATTGTGAAATTCTTTGGGAGCTTTTTGTTTTACAACACATTAATTGGGGGTTGGTGGGATTAATAATTGTTGTTCTGAGCATCATTGGCAAGTTATTTCTCTGCTTAATTAAGCTCAGACAATTGTTTTTGTTCAATCTGTTAATTAATAAGCTTATCTTCTATGATCATCCTTGTGTGATAAAATGTTCTTGCATTGTTTTGATTTTTTCTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00003	378866	382594	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000003s00001174.1	PF08610.5	Pex16	2	305	4.40E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.433
SRR1783600	control	4.413
SRR1783602	moderate drought stress	7.010
SRR1811619	moderate drought stress	6.709

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.616
DRR006520	Root Summer glycyrrhizin high producing strain	4.892
DRR006521	Root Winter glycyrrhizin high producing strain	15.576
DRR006522	Root Winter glycyrrhizin high producing strain	15.821
DRR006523	Root Summer glycyrrhizin low producing strain	4.547
DRR006524	Root Summer glycyrrhizin low producing strain	4.476
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.131
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.458
SRR2868004	Drought Stress (root)	10.286
SRR2967015	Control (root)	11.582

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.913
SRR9715740	Leaf	22.119
SRR9715741	Leaf	16.357
SRR9715739	Root	1.269
SRR9715742	Root	2.980
SRR9715743	Root	2.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.066
SRR8749028	MeJA induced 9h	5.366
SRR8749029	MeJA induced 9h	2.840
SRR8749030	Uninduced	6.196
SRR8749031	Uninduced	3.137
SRR8749032	Uninduced	1.738

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.567
SRR8400027	Control - Root	11.727